Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq5 170 2e-37 >seq5 Length=2511979 Score = 170 bits (188), Expect = 2e-37 Identities = 261/370 (71%), Gaps = 4/370 (1%) Strand=Plus/Plus Query 13645 TGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCG 13704 ||||| || || | ||||| |||||| ||| | ||||||||||| || ||||| Sbjct 2471903 TGTTTGAACATGACGCACGCGAAATCAGTATGCAAACCCTCATCTCTTGAGATCAGTTCA 2471962 Query 13705 TTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAAT 13764 ||||| || || || || |||||||| ||||| ||||| | |||||| || || || || Sbjct 2471963 TTTGAGAAGGTCAAGCCAGGCATCAAACCTCGCTTTTTAAGCCAAAAGATAGCTGCAAAG 2472022 Query 13765 GATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGAT 13824 || || || ||||| ||||| || ||||| ||||| || | | || ||| | | | | Sbjct 2472023 GACCCAGAGAAGAAAATTCCTTCCACTGCGGCAAAAGCAACGATTCTTTCACTGTAAGGT 2472082 Query 13825 GCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATT 13884 || | ||| || ||||| || | |||||||||| ||| || || || |||| Sbjct 2472083 GCATCTTTATTGCCAATCCACTTCATTGCCCATTCAGCTTTCTTAGCGATGCAAGGCATT 2472142 Query 13885 GTTTCGATTGCATTGAATA--AATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAA 13942 || || | |||||||| | ||| | || | | |||| || || || |||| Sbjct 2472143 GTCTCTACAGCATTGAAAAGCCTTGTCCTCTCAGCGGAATCCTTG--ATATAAGTTTCAA 2472200 Query 13943 TAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAAC 14002 | || | ||| |||||||||||||| || ||||| || || || || |||||||| |||| Sbjct 2472201 TGAGCAGGCTGTACATTTCAGAGTGGATATTTTCCATGGCAATTTGGAAACCATAGAAAC 2472260 Query 14003 ATCTAGCTTC 14012 | | |||||| Sbjct 2472261 AGCGAGCTTC 2472270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478557775481040