Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq25 87.8 2e-12 >seq25 Length=1288025 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| ||||||||| || || |||| ||||| ||||| || |||||||||||| | Sbjct 1059588 CCACCTCTTAAACGCAAGACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCGGAC 1059529 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||| || || |||||||| | || | ||| |||||||||||||| Sbjct 1059528 AGAGTACGACCATCTTCCAGCTGCTTACCAGCGAAAATTAAACGCTGCTGATCGGGAGGA 1059469 Query 143078 ATGCCT 143083 || ||| Sbjct 1059468 ATACCT 1059463 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| ||||||| ||| || || | ||||| || ||||| ||||||||||| | Sbjct 1059985 CCTCCTCTCAAACGCAGAACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCTGAC 1059926 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| | ||||| || |||||||| ||| |||| ||||| |||||||| || || Sbjct 1059925 AATGTACGACCATCTTCCAGCTGTTTACCGGCAAAGATGAGACGCTGCTGATCAGGTGGG 1059866 Query 143078 ATGCCT 143083 || ||| Sbjct 1059865 ATACCT 1059860 Score = 86.0 bits (94), Expect = 6e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| |||||||| || || ||||| | ||| || || || || |||||||| ||| Sbjct 1057237 GCCTCCGCGTAAACGTAATACCAAATGTAATGTTGACTCCTTCTGAATGTTGTAGTCGGA 1057178 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || || | || || | |||||| || || |||| ||||||||||||||||| || Sbjct 1057177 CAGAGTACGACCATCCTCCAATTGTTTGCCGGCGAAGATGAGACGTTGCTGATCGGGTGG 1057118 Query 143077 TATGCCT 143083 |||||| Sbjct 1057117 GATGCCT 1057111 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| |||||||| || || |||| ||||| || || || ||||||||||| | Sbjct 1058408 CCTCCTCTCAAACGCAAGACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCTGAC 1058349 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||| || |||||||| ||| |||| ||||| |||||||| || || Sbjct 1058348 AAGGTACGACCATCTTCCAGCTGTTTACCGGCAAAGATGAGACGCTGCTGATCAGGTGGG 1058289 Query 143078 ATGCCT 143083 || ||| Sbjct 1058288 ATACCT 1058283 Score = 82.4 bits (90), Expect = 8e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || ||||||| || || || || || ||||||||||| Sbjct 1060213 CCACCGCGAAGACGAAGGACCAAATGAAGAGTGGACTCCTTCTGAATGTTGTAATCCGAA 1060154 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | || | ||||| ||||| || |||||| | || ||||| ||||| || ||||| Sbjct 1060153 AGAGTACGTCCA-TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGCTGCTGGTCAGGAGG 1060095 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| || || ||| | | || | ||||| | || || || Sbjct 1060094 GATTCCTTCCTTGTCTTGGATCTTAGCTTTGACGTTCTCAATGGTGTCTGACGGCTCAAC 1060035 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 ||| | || | || || || ||||| || || ||||| || |||||| || Sbjct 1060034 TTCGAGGGTGATGGTTTTTCCTGTCAAGGTCTTCACGAAAATCTGCATACCT 1059983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506981532791520