Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq28 95.1 2e-14 >seq28 Length=1197646 Score = 95.1 bits (104), Expect = 2e-14 Identities = 127/174 (73%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 70226 TGGAATCCTGCAGATTTGCACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTT 70285 ||||||||| | | || | | |||||| | || ||||| || |||||||||||||| Sbjct 525515 TGGAATCCTTCGGCATTACCACTGATGGCATTGCCGCCGTGCCATTGTTTGGCTCAGTTC 525574 Query 70286 TAC-TCGTACGATGGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCT 70344 ||| | | | | ||| || |||| || ||||||||| || ||| || ||||| | Sbjct 525575 TACGTAGCA-AACGGCGAACTGTCTTGTCAAATGTATCAAAGATCTGCTGATATGGGTTT 525633 Query 70345 CGGTGTACCCTTTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCA 70398 ||||| || || ||||| || || |||||| || |||| |||||||||||| Sbjct 525634 GGGTGTCCCTTTCAACATAGCTAGTTATTCTTTGCTGACATGCATGATTGCTCA 525687 Score = 89.7 bits (98), Expect = 8e-13 Identities = 125/173 (72%), Gaps = 2/173 (1%) Strand=Plus/Minus Query 70226 TGGAATCCTGCAGATTTGCACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTT 70285 ||||||||| | | || | | |||||| | || ||||| || |||||||||||||| Sbjct 534854 TGGAATCCTTCGGCATTACCACTGATGGCATTGCCGCCGTGCCATTGTTTGGCTCAGTTC 534795 Query 70286 TAC-TCGTACGATGGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCT 70344 ||| | | | | ||| || |||| || ||||||||| || ||| || |||| | Sbjct 534794 TACGTAGCAA-ACGGCGAACTGTCTTGTCAAATGTATCAAAGATCTGCTGATGTGGGTTT 534736 Query 70345 CGGTGTACCCTTTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTC 70397 ||||| || || ||||| || || |||||| || |||| ||||||||||| Sbjct 534735 GGGTGTCCCTTTCAACATAGCTAGTTATTCTTTGCTGACATGCATGATTGCTC 534683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741011160837360