Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_005262.3 Length=63882 Score E Sequences producing significant alignments: (Bits) Value seq4681 219 2e-52 >seq4681 Length=1090 Score = 219 bits (242), Expect = 2e-52 Identities = 299/415 (72%), Gaps = 2/415 (0%) Strand=Plus/Plus Query 3526 GGTTCCCGCTATCCACCCCTGACACTGCCGGCGTATCGCGGCCTTGACGCGCTTGCTCTT 3585 ||| || || ||||||||| |||| |||| || || |||||| || ||||||||||| Sbjct 642 GGTGCCTGCCTTCCACCCCTCACACAGCCGCCGAATACTGGCCTTCACCCGCTTGCTCTT 701 Query 3586 GGTGTCCGATTCCTCGTGCGCCCGGATCATGACGAGCAGGCTGTACACGAGGTCCATCGG 3645 |||||| ||| || || ||||||||||| || |||||||||||||| ||||||||||| Sbjct 702 GGTGTCGCTTTCTTCATGGGCCCGGATCATCACCAGCAGGCTGTACACCAGGTCCATCGG 761 Query 3646 CTGGGCGCGCAGCTTCTCCCGGTTGTACTCGCGGCCGTCGCTGGCCGTGACGACGGTGAT 3705 | | ||| ||||||| |||| | || ||||| || || || || ||||| Sbjct 762 GTTTTCTTTCAGGCGCTCCCGGCTGTAGGCCTTTCCATCGCTCGCAGTCACCACTGTGAT 821 Query 3706 GCCGGCGCCGACAATCTGACTGAGCTGGGCCTGCGCCTGGATGGGTTCCGCGCGGCTCAG 3765 ||| || |||||||| || || ||||| |||||||| || || ||||| || Sbjct 822 GCCCGCATTTACAATCTGGGCCAGTTGCGCCTGAGCCTGGATCGGCTCGGCGCGTGAGAG 881 Query 3766 GCGATCGAGCCCTTCGACGATGAGAACGGAGCCGGTCGGAACCCGGCCATCCTCGACGGC 3825 || || ||||| || |||| || || || || | | | ||| || |||| || | Sbjct 882 CCGGTCTAGCCCCTCTACGACAAGCACCGATCCAGATGCGATCCGCCCGGCCTCAACCCC 941 Query 3826 CCGGAGGAAGGTGCCGAGCGCCCCGCGCGTGACGTGCCGCTGATGGTAGGCCGACAGTCC 3885 | ||||| | || |||||||| ||||||||||||| |||||||||||||| || Sbjct 942 CGCCAGGAACGCCCCCAGCGCCCCCGATTTGACGTGCCGCTGGTGGTAGGCCGACAGGCC 1001 Query 3886 CTCGTCGCGAAGCGTCAGGCTTG-CATCGAGCTGCATCCCGTGTTCAGCACCCCA 3939 || || | | ||| | ||||| | || ||||||| |||||| || || |||| Sbjct 1002 TTCATCCAGCATCGTGA-GCTTGTCGTCCAGCTGCAGCCCGTGCTCTGCTGCCCA 1055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 204284687497878