Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_005263.2 Length=48177 Score E Sequences producing significant alignments: (Bits) Value seq3933 111 5e-20 >seq3933 Length=1275 Score = 111 bits (122), Expect = 5e-20 Identities = 143/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 7168 CCCTATTGCGCGGCCATCGCCGCTGCGATACCCGGGTATGTGCGGCTGCGCTCTTTCCAG 7227 ||| ||||| |||||| || || || || || || || |||||||| ||||||||| Sbjct 1075 CCCCATTGCTGGGCCATGGCTGCGGCAATCCCTTCATAGGTTCGGCTGCGTTCTTTCCAG 1134 Query 7228 CGATCAGGCGACGGCGCCATGCGGTGCACGCGAGGCTCTCGACCGTCAACGATGTCGGTC 7287 || || || || ||||| ||| | || | ||||| ||||| ||||| | |||| Sbjct 1135 CGGTCTGGGCTGGGTGCCATCATGTGAATTCGTGCCTCTCTGCCGTCGACGATCTGGGTC 1194 Query 7288 GGGACGAGCGGCGGC-AGTTCTTTGAGCCACAGGCAGGTGGCCTTCGTCTCGCCGTGTCC 7346 || || || ||| ||||| || ||||| | |||||| |||||||||||| || || Sbjct 1195 GGCTTAAGGGGTGGCAAGTTC-TTCAGCCAAAAGCAGGTCCGCTTCGTCTCGCCATGGCC 1253 Query 7347 GAACTGCCACGGCTG 7361 |||||||||||||| Sbjct 1254 AAACTGCCACGGCTG 1268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 154035313343548