Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq5 163 7e-35 seq11 156 1e-32 seq25 123 6e-23 seq90 89.7 1e-12 >seq5 Length=2511979 Score = 163 bits (180), Expect = 7e-35 Identities = 248/350 (71%), Gaps = 5/350 (1%) Strand=Plus/Minus Query 268923 TACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATT 268982 ||||| |||||||||| | ||||| || || ||||| || || || |||||||| || | Sbjct 2472281 TACAGGTTCCTGAAGCTCGCTGTTTCTATGGTTTCCAAATTGCCATGGAAAATATCCACT 2472222 Query 268983 CAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGAC 269042 | || |||||||| || | || || |||||||| | ||| | || | || ||| | Sbjct 2472221 CTGAAATGTACAGCCTGCTCATTGAAACTTATATCAAGGATTCCGCTGAGAGGACAAGGC 2472162 Query 269043 TATTTTCTTCTATGAGA-ACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAA 269101 | || | || | ||| || ||| || | || ||| |||||||||| |||| Sbjct 2472161 TTTTCAATGCTGT-AGAGACAATGCCTTGCATCGCTAAGAAAGCTGAATGGGCAATGAAG 2472103 Query 269102 TGGATAAACGATAGCG---CGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAA 269158 ||||| | ||| | | |||||| | ||||| | |||||||||||||| || ||| Sbjct 2472102 TGGATTGGCAATAAAGATGCACCTTACAGTGAAAGAATCGTTGCTTTTGCCGCAGTGGAA 2472043 Query 269159 GGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATG 269218 || || ||||| || ||||| ||||| |||||||||||| | || || |||| | ||| Sbjct 2472042 GGAATTTTCTTCTCTGGGTCCTTTGCAGCTATCTTTTGGCTTAAAAAGCGAGGTTTGATG 2471983 Query 269219 CCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACA 269268 || || || || ||||| || ||| |||| || || || ||||| || Sbjct 2471982 CCTGGCTTGACCTTCTCAAATGAACTGATCTCAAGAGATGAGGGTTTGCA 2471933 >seq11 Length=2187803 Score = 156 bits (172), Expect = 1e-32 Identities = 151/194 (78%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429 |||||||||| || |||||||||||||| | || ||||| |||||||| |||||||| | Sbjct 911322 CTTTCTGAATGTTGTAGTCAGATAGAGTACGTCCATCTTCAAGTTGTTTGCCAGCAAAGA 911263 Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTT 104489 | | | ||| || |||||||| || ||||| || || || || ||||| || ||||||| Sbjct 911262 TCAATCGCTGCTGGTCAGGAGGGATACCTTCCTTGTCTTGGATTTTTGCCTTGACATTTT 911203 Query 104490 CTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAA 104549 | | ||| || ||| || ||||| || || || |||||||| || || || || || | Sbjct 911202 CGATGGTGTCTGAAGGCTCGACCTCAAGGGTGATGGTCTTACCCGTCAGGGTCTTGACGA 911143 Query 104550 ATATCTGCATTTTG 104563 | |||||||||||| Sbjct 911142 AGATCTGCATTTTG 911129 >seq25 Length=1288025 Score = 123 bits (136), Expect = 6e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || | ||| | || || || |||||||| || || || || ||||| | || || Sbjct 1060199 AAGGACCAAATGAAGAGTGGACTCCTTCTGAATGTTGTAATCCGAAAGAGTACGTCCATC 1060140 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| ||||| |||||||||||||| || | ||| || |||||||| |||||||| || || Sbjct 1060139 TTCAAGTTGCTTTCCAGCAAAAATAAGACGCTGCTGGTCAGGAGGGATTCCTTCCTTGTC 1060080 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 || ||||| ||||| || || || | ||| || || || || || || || || || Sbjct 1060079 TTGGATCTTAGCTTTGACGTTCTCAATGGTGTCTGACGGCTCAACTTCGAGGGTGATGGT 1060020 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || | || || || || |||||||| Sbjct 1060019 TTTTCCTGTCAAGGTCTTCACGAAAATCTGCAT 1059987 Score = 104 bits (114), Expect = 5e-17 Identities = 86/105 (82%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 |||||||||||||| ||||| ||||| ||||| || | |||||| |||||| || || Sbjct 1056933 CCTTCTTTATCCTGGATCTTCGCTTTGACATTCTCAATGGTATCAGAAGGTTCAACTTCC 1056874 Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || ||||| ||||| ||||| |||||||| ||||| || |||||| Sbjct 1056873 AGAGTAATGGTCTTTCCAGTTAGTGTTTTGACAAAGATTTGCATT 1056829 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||||||||| ||||| || ||||| || || || | ||| ||| ||||| || Sbjct 1059305 ATACCTTCTTTATCTTGAATTTTCGCTTTAACGTTCTCGATGGTGTCGGATGGTTCAACT 1059246 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || ||||| ||||| ||||| || || || ||||| |||||||| Sbjct 1059245 TCAAGAGTAATGGTCTTTCCAGTCAGGGTCTTCACAAAGATCTGCAT 1059199 >seq90 Length=518052 Score = 89.7 bits (98), Expect = 1e-12 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 238650 ATGTATTGGGCTAAAAAGATACTTGAATGGACTAGATCTCCAAAGGAAGCTCTTAGATAT 238709 ||||||||||| ||||| || || |||||||| | | || | |||||||| ||| || Sbjct 405669 ATGTATTGGGCAAAAAAAATCCTGGAATGGACAGAAACGCCGGAAGAAGCTCTGAGA-AT 405611 Query 238710 AGT-ATTTATCTGAACGATAAATACGAACTCGACGGTACGGATCCTAACGGATACGTAGG 238768 | || |||||||||||| |||| | || || ||||| | ||| ||||| || Sbjct 405610 CGCCATATATCTGAACGATCGATACAGTTTGGATGGCCGAGATCCGAGCGGTTACGTTGG 405551 Query 238769 TTGTATGTGGTCAATATGTGGATTACACGATAGGGCATGGTCTGAGAGACCTATATTTGG 238828 ||| |||||||| || ||||| | || || | || |||| | || | | ||||| Sbjct 405550 TTGCATGTGGTCCATCTGTGGTATCCATGACATGGGATGGAAGCAACGAGATGTCTTTGG 405491 Query 238829 AAAAGTTAGATACATGAATTATGAAGGAACTAAGAAAAAATTTGATGT 238876 ||| || | || ||||| || |||| | | ||||||||| || Sbjct 405490 GAAAATTCGCTATATGAACTACAAAGGTTGTCAACGAAAATTTGACGT 405443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151321894613688