Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_005882.1 Length=36748 Score E Sequences producing significant alignments: (Bits) Value seq3937 167 5e-37 >seq3937 Length=1273 Score = 167 bits (184), Expect = 5e-37 Identities = 320/459 (70%), Gaps = 17/459 (4%) Strand=Plus/Minus Query 5818 ATCCAGTCGCTCGCGTGGTCGGAGATTTCGTAGCTCCACACACGATCGGCCGCGATCCGG 5877 || ||| |||| ||| |||| | |||||||||||||| || | || | || || Sbjct 738 ATGCAGCCGCTGTTGTGATCGGTAACCTCGTAGCTCCACACGCGCCGGTCCTCAATGCGC 679 Query 5878 GCGAGGTTCTTTGGCTTGTTCTTGTAGAACTCAGCGTGATCCATCACGCGCAGGCCGTTC 5937 ||||||||| ||||||||||||| ||||| | |||||||| ||||||| || Sbjct 678 TTGAGGTTCTTGGGCTTGTTCTTGTTGAACTTTTTGGCCTCCATCACCTGCAGGCCCATC 619 Query 5938 GCA--CGGGCATCGGCTACCGGCTTCAGGTAGTACAGCACGCACAGGCTCGCGTCGATCT 5995 || |||| | || | | || |||||||||||| ||||||||||| |||||||||| Sbjct 618 TCAGCCGGG--TTGGTT---GTCTCCAGGTAGTACAGGACGCACAGGCTGGCGTCGATCT 564 Query 5996 GCCACACGTGATTCGGATGCAGGCTTGCCAGTTCAGTCACTGGGGCCGG-TGCGAGCAGT 6054 |||| ||||| || || |||||||| ||| || | |||| || || ||| ||||| Sbjct 563 GCCAGACGTGGTTGGGGTGCAGGCTGCGCAGCTCCCGCGCTGGTGCAGGCTGC-AGCAGC 505 Query 6055 TGGTCGGGATGGACGCCATACATGCGTAGCGCGCGTTGAATCGCGCTATCGGACAACG-G 6113 ||||| || || | ||||| ||||| | || || || ||||| || | || Sbjct 504 TGGTCAGGGTGCAGCCCATAGATGCGCATTGCTCGGGCTATGGCGCTTGTCGAGAGCGCT 445 Query 6114 CCGCAGCTCGCCGGTGGACTCG--TCGAGAAATTCAGCCCGGATCATGCCATTCGCGCGC 6171 ||| ||||| ||| |||| |||| ||||| |||||| ||||| |||||| Sbjct 444 TTGCA-TTCGCCCGTG--CTCGGATCGACGCGCTCAGCGCGGATCGCCCCATTGGCGCGC 388 Query 6172 AAAATCTCCG-CCGCGTCACCGACCGTATACAGGCGCTTGCCGTTCTTACGCGTCGACTC 6230 || | || | | |||| | | | || || |||||||| |||||||| ||| | ||| Sbjct 387 AACA-CTGTGACTGCGTGATCAATGGTGTAGAGGCGCTTTCCGTTCTTGCGCATGCCCTC 329 Query 6231 CATGAGCGTTGCTGAAATCAGCATCGCTTCGTCGCGCGT 6269 ||||| | | | | ||||| | || || ||||| || Sbjct 328 CATGACCATGGTGCAGATCAGTTTGGCCTCTTCGCGTGT 290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117464765633720