Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_006548.1 Length=38439 Score E Sequences producing significant alignments: (Bits) Value seq3937 176 1e-39 >seq3937 Length=1273 Score = 176 bits (194), Expect = 1e-39 Identities = 476/717 (66%), Gaps = 20/717 (3%) Strand=Plus/Minus Query 6365 GCGTTGAGTTCGTCCAGGTCGTTGACCGGTTCGAACTTCAGCTTCGACTCGAACTTGCGC 6424 |||||||| || ||||||| |||||| || | || || | |||||| | |||| Sbjct 1047 GCGTTGAGCTCTTCCAGGTTGTTGACTGGCTTGAGGCGCAAGCCGGCCTCGAATTCGCGC 988 Query 6425 TCGATGATGTTCCGGGCGTTTTCGACCGAGCCCGTAACCCGCGCCGCGCCTGGCGCGTGC 6484 || | |||| ||||| || || || ||| || | || || | || ||||| Sbjct 987 TCCAGAATGTCGCGGGCCTTCTCCACGCTGCCGGTTGCACGGGCGTTCTCGGGTGCGTGG 928 Query 6485 ACGATGACCTCGATGCCCAGGGAGCAGCAG-AGGTTCTTCGACATCGCCGA-GATGTTGG 6542 |||| || | ||||| || |||| |||||||| |||| |||| | |||||| Sbjct 927 GCGATTTGCTGCACATCCAGGCGGC-GCAGCAGGTTCTTGAACAT-GCCGCTGGTGTTGG 870 Query 6543 CCGAACCAGGGTCCATCATCAGGATGCGTGGCACGCCGTGGAGCATGTCGGCTCCACCAC 6602 | || ||||||||||| |||| || || || | || | ||| || || | Sbjct 869 CACTGCCCATGTCCATCATCAAGATGAAGGGGACACCATAGAACGGATCG---CCCCCGC 813 Query 6603 GCTCTTGCATGGCCTCGATCA-GCACCGTGCAGAAGTTCTCGCCACTCTCGGCGCCCATC 6661 ||| || || || |||| | ||| ||| || ||| | | |||||| || | | | Sbjct 812 GCTGCTGAATCGCGGCGATGAAGCATGCTGC-GATGTTGGCCGCGCTCTCGCCGTCAAAC 754 Query 6662 ACATAGCGAACGTAGATCCAGCCGGTGTAGTGATCGGTGATCTCGTAGGACCACACACGG 6721 ||||| || |||| |||||| ||| ||||||||| | ||||||| |||||| || Sbjct 753 ACATACATGGCGAAGATGCAGCCGCTGTTGTGATCGGTAACCTCGTAGCTCCACACGCGC 694 Query 6722 TCAGCGGCCACGCGATCCAGGTTCGCTGGCTTGTTCTTGTAGAACTCCTTGCGATCCATC 6781 | | | ||| | |||||| ||||||||||||| ||||| ||| |||||| Sbjct 693 CGGTCCTCAATGCGCTTGAGGTTCTTGGGCTTGTTCTTGTTGAACTTTTTGGCCTCCATC 634 Query 6782 ACCTGTAGGCCGCT---AGCCTTCTTGTTCGCCCCAGGCTTCAGGTAGTAGAGGACGCAG 6838 ||||| ||||| | |||| ||| | | | | ||||||||| |||||||| Sbjct 633 ACCTGCAGGCCCATCTCAGCCGGGTTGGTTGTCTC------CAGGTAGTACAGGACGCAC 580 Query 6839 AGGGACGCATCGATCTGCCAGACGTGGTTCGGATGCAGGCTGCGCAGTTCGGTGACCGGC 6898 ||| || |||||||||||||||||||| || |||||||||||||| || | || Sbjct 579 AGGCTGGCGTCGATCTGCCAGACGTGGTTGGGGTGCAGGCTGCGCAGCTCCCGCGCTGGT 520 Query 6899 TCCGGCGCCAATAGCTGGGATGGATGCAGGCGGTAGCTGTGCAGCGCGCGGCTGATCGCG 6958 | ||| || |||||| || ||||| | ||| || ||| || ||| || ||| Sbjct 519 GCAGGCTGCAGCAGCTGGTCAGGGTGCAGCCCATAGATGCGCATTGCTCGGGCTATGGCG 460 Query 6959 CTGATCGACATCGGGCGGATCTCTCCGGTGCGTCGG-TCGACAGACTCCGCACGGATCAA 7017 || |||| | || | || || |||| |||| ||||| ||| || |||||| Sbjct 459 CTTGTCGAGAGCGCTTTGCATTCGCCCGTGC-TCGGATCGACGCGCTCAGCGCGGATCGC 401 Query 7018 GCCGCTGGCGCGAAGATCCTCGACCGCATCAGCAACGGAATACAGGCGCTTCGCGTT 7074 || ||||||| | | ||| || | | ||| || || |||||||| |||| Sbjct 400 CCCATTGGCGCGCAACACTGTGACTGCGTGATCAATGGTGTAGAGGCGCTTTCCGTT 344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122875632391732