Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq25 138 1e-27 seq11 105 6e-18 seq30 89.7 5e-13 >seq25 Length=1288025 Score = 138 bits (152), Expect = 1e-27 Identities = 175/237 (74%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || ||||||||||| || | || ||||||| ||||||||||| || | ||||| Sbjct 1056836 TTTGCATTCCTCCTCTCAGACGGAGGACTAAGTGCAGGGTAGATTCCTTCTGGATGTTAT 1056777 Query 94833 AATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTG 94890 |||| || || || || ||| ||||||||||| || ||||||| || | ||||| Sbjct 1056776 AATCAGACA-AG-GTACGACCATCTTCCAGCTGTTTGCCAGCAAAGATCAAACGCTGCTG 1056719 Query 94891 ATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGC 94950 |||||| ||||| || || || || | ||| || ||||| || ||| ||| |||| Sbjct 1056718 ATCTGGTGGAATGCCCTCCTTATCTTGAATCTTGGCCTTAACATTCTCGATAGTATCAGA 1056659 Query 94951 GTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || |||| |||||||| || ||||| | || || |||||||||||||| Sbjct 1056658 AGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAATGTCTTGACAAAGATCTGCAT 1056602 Score = 95.1 bits (104), Expect = 1e-14 Identities = 99/128 (77%), Gaps = 4/128 (3%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||||||||| |||| |||||||| | |||||| |||||||| | ||| |||| || Sbjct 1059985 CCTCCTCTCAAACGCAGAACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAAT--CTG 1059928 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | | ||| || ||| ||||||||||| ||| ||||||| | | |||||||| || | Sbjct 1059927 ACAATGTACGACCATCTTCCAGCTGTTTACCGGCAAAGATGAGACGCTGCTGATCAGGTG 1059868 Query 94899 GAATACCT 94906 | |||||| Sbjct 1059867 GGATACCT 1059860 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 94902 TACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGT 94961 ||||||||||||| | ||| || || || ||| ||| |||||||| | || || | Sbjct 1057343 TACCTTCTTTGTCTTGAATCTTGGCTTTAACGTTCTCGATAGTGTCAGAAGGTTCAACTT 1057284 Query 94962 CAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | | |||||||| ||||||||||||||||| || || |||||||||| Sbjct 1057283 CGAGAGTGATGGTCTTTCCAGTAAGAGTTTTAACGAAAATCTGCATGC 1057236 Score = 86.0 bits (94), Expect = 6e-12 Identities = 97/128 (76%), Gaps = 4/128 (3%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||||||||| ||||| |||||||| | ||||| ||||| || | ||| |||| || Sbjct 1058408 CCTCCTCTCAAACGCAAGACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAAT--CTG 1058351 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | | || || ||| ||||||||||| ||| ||||||| | | |||||||| || | Sbjct 1058350 ACAAGGTACGACCATCTTCCAGCTGTTTACCGGCAAAGATGAGACGCTGCTGATCAGGTG 1058291 Query 94899 GAATACCT 94906 | |||||| Sbjct 1058290 GGATACCT 1058283 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| || ||||| |||||||| | |||||| || || || | ||| |||||| | Sbjct 1059588 CCACCTCTTAAACGCAAGACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCGGAC 1059529 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| ||| |||||||| || || | || ||||| | |||||||| |||||| Sbjct 1059528 AGAGTACGACCATCTTCCAGCTGCTTACCAGCGAAAATTAAACGCTGCTGATCGGGAGGA 1059469 Query 94901 ATACCT 94906 |||||| Sbjct 1059468 ATACCT 1059463 >seq11 Length=2187803 Score = 105 bits (116), Expect = 6e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| || || ||||| || ||||||| |||| ||||| || ||||| |||||||| || Sbjct 911288 ATCTTCAAGTTGTTTGCCAGCAAAGATCAATCGCTGCTGGTCAGGAGGGATACCTTCCTT 911229 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | |||||||||||||| ||| ||||| | | ||||| |||| ||||| Sbjct 911228 GTCTTGGATTTTTGCCTTGACATTTTCGATGGTGTCTGAAGGCTCGACCTCAAGGGTGAT 911169 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || || || || || || || ||||||||||| Sbjct 911168 GGTCTTACCCGTCAGGGTCTTGACGAAGATCTGCAT 911133 >seq30 Length=1199123 Score = 89.7 bits (98), Expect = 5e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 |||||||||||| || |||||||| || | ||| || ||| || |||| ||| || Sbjct 428881 CACCAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGACCATCTTC 428940 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCT 94906 |||||| || ||| | ||||| || || |||||||| |||||||||||| Sbjct 428941 CAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGATCAGGAGGAATACCT 428989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448262139522960