Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq110 84.2 4e-11 >seq110 Length=421644 Score = 84.2 bits (92), Expect = 4e-11 Identities = 163/237 (69%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 193875 GGTGTAGCAAAGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGATTC 193934 ||||| || ||| | |||| ||||||||| | | ||||| || ||| | || | Sbjct 51245 GGTGTTGCTAAGCTTTATGCCTATTGGATCGTAACTAATTACCGAGAGGCTTACAACATG 51304 Query 193935 CACGCTAGTTCTGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTA 193994 |||| || ||||||||||||||| || ||| ||| | | |||||||| || ||| Sbjct 51305 TTCGCTTGTAATGGTATTCTCTTCAACCATGAAAGTCCTCGTCGTGGTGAGACCTTCGTA 51364 Query 193995 ACTCGTAAGATTACACAAGGTTTATCTAAGATCTCTGTTGGATTACA--GAAGATTCTTT 194052 || | ||||| |||| | | | ||||| || || | | | | ||| ||| || Sbjct 51365 ACCAGAAAGATCACACGTTCTGTCGCCAAGATTTC-ATTAGGTCAGATGGAACATT-TTG 51422 Query 194053 ATCTTGGTAATCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAG 194109 | ||||| ||||| | | || || |||||||| ||||| | |||||||| |||| Sbjct 51423 AGCTTGGAAATCTCGACTCCAAAAGAGATTGGGGTCACGCCAGAGATTATGTCGAAG 51479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807502850234160