Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq5 156 5e-33 seq18 132 6e-26 >seq5 Length=2511979 Score = 156 bits (172), Expect = 5e-33 Identities = 265/382 (69%), Gaps = 3/382 (1%) Strand=Plus/Plus Query 33286 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGT 33345 || ||||| ||||| | || |||||||| |||| |||||| ||||| || ||| Sbjct 2471900 AAGTGTTTGAACATGACGCACGCGAAATCAGTATGCAAACCCTCATCTCTTGAGATCAGT 2471959 Query 33346 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCG 33405 || || || || || | || ||||| | || ||||||||||||||||| || | || Sbjct 2471960 TCATTTGAGAAGGTCAAGCCAGGCATCAAACCTCGCTTTTTAAGCCAAAAGATAGCTGCA 2472019 Query 33406 AATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAA 33465 || || ||||| ||||| |||||||| ||||| ||||| |||| | ||| || | ||| Sbjct 2472020 AAGGACCCAGAGAAGAAAATTCCTTCCACTGCGGCAAAAGCAACGATTCTTTCACTGTAA 2472079 Query 33466 CCGGC-GCTGTCATG--TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGC 33522 || || | || |||||||| ||||| || || ||||| | |||||| Sbjct 2472080 GGTGCATCTTTATTGCCAATCCACTTCATTGCCCATTCAGCTTTCTTAGCGATGCAAGGC 2472139 Query 33523 ATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCG 33582 || || |||| ||||| || || | | ||| ||| || | |||||| || Sbjct 2472140 ATTGTCTCTACAGCATTGAAAAGCCTTGTCCTCTCAGCGGAATCCTTGATATAAGTTTCA 2472199 Query 33583 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAA 33642 || | || || |||||||| || || || ||||| ||||| || || || || |||||| Sbjct 2472200 ATGAGCAGGCTGTACATTTCAGAGTGGATATTTTCCATGGCAATTTGGAAACCATAGAAA 2472259 Query 33643 CATCTAGCCTCGGTAATCTGTA 33664 || | ||| || | || ||||| Sbjct 2472260 CAGCGAGCTTCAGGAACCTGTA 2472281 >seq18 Length=1446981 Score = 132 bits (146), Expect = 6e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 63137 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 63196 ||||||||| ||||||||| | ||||||| || ||||||| |||||||||| || Sbjct 597692 TTCGAACTCTTCTCCCCAAGTGTCAGCCAATCCTGGGCATTCATGAGGACACATCAGTGA 597633 Query 63197 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63256 ||| || || ||| | || ||| |||||| ||||| |||||||| ||||| ||| Sbjct 597632 CCAATCGCCATCAGATTCAACACGTCGCATAAACAGATCGGGAATCCAGAGAGCGTAAAA 597573 Query 63257 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63316 || ||| | | | || ||| || || || ||||| || || | |||||| || | | Sbjct 597572 TAAATCACGCGCACGATTTTCTTCTTTGCCGGTATTTTTCTTCAAATCGAGAAAATCGAA 597513 Query 63317 AATATCAGAATGCCACGGTTCCAAGTATATGGC 63349 | |||||||||||| ||||||||||| || || Sbjct 597512 CACATCAGAATGCCAAGGTTCCAAGTAGATTGC 597480 Score = 111 bits (122), Expect = 2e-19 Identities = 130/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 63618 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTC 63677 |||| ||| | ||| |||||||| || || ||||| ||||| || || | ||||||||| Sbjct 597075 GCATAAAACAGGGTGGGAGAAGCATGAGTGAACCACTTTTCCGACAGCAAATTGTACGTT 597016 Query 63678 TCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGC 63737 ||||| || | ||| |||||| |||||| || |||| || | ||| | || |||| Sbjct 597015 TCAATGGCAGCGTCAATATCCTCCCCATGAATACCAACTGACACTCTCATCATCAAGTGC 596956 Query 63738 TGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 63793 ||||| | ||| || || | |||||||||||||||||||| || ||||| Sbjct 596955 TGAGGACGTTCCACTGGTTTACCATCAATTTTCAACAAGTAGGATTTCTCTAAAGT 596900 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 62336 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62395 ||| || |||||||| ||||| || || || ||||||||| || || | ||| | Sbjct 598786 TACCTGGAATTCTCCCGACAAAACCCTGCGGACATAAATATTAGAAGTGTATGCTTCAAT 598727 Query 62396 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 62448 ||| ||||||||||||| |||||| ||||| || || || ||||||||||||| Sbjct 598726 CGATTCATTATTTCCCAGAATTTGCGCAGTCGAAGCTGTGGGCATAGGTGCCA 598674 Score = 87.8 bits (96), Expect = 2e-12 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 62946 ATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTG 63005 ||||| ||||| | ||| || || ||||| || || ||||| |||||||| ||| | Sbjct 597974 ATCTCTGTGCACAAATTGCTGCATTTGATGGTACCCAAATTCTGTTGATTCGACTTGCGG 597915 Query 63006 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAA 63063 || || |||||||| || | ||| |||| || ||||||||||| || ||||| |||| Sbjct 597914 TTGCAGGCATCCTTGTACAAGATGTATGGGGTGCCAGTTTCAATTTGCGATTCAATAA 597857 Score = 84.2 bits (92), Expect = 3e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 62601 TCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTA 62660 ||||| || ||||| || || || || ||||||||||||||||| || || | ||| Sbjct 598450 TCAGCGAGCTCACACGAAGCTTCCAAAGCGCCGTAATAAATGGTTTCAAAAATGTGCTTG 598391 Query 62661 TTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCT 62720 ||||| ||| || || || |||||||| || | |||||||| || ||||| Sbjct 598390 TTTAGCAATTGCGCCTCTTCACTGTCAAATGGGTAGCGCATCAGAATAAAAGCATCCGCC 598331 Query 62721 AATCCTTGAACACCAATACCGATAGG 62746 || |||||||| ||||| || || || Sbjct 598330 AAGCCTTGAACTCCAATTCCAATTGG 598305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622906817447760