Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq90 109 5e-19 >seq90 Length=518052 Score = 109 bits (120), Expect = 5e-19 Identities = 159/222 (72%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 71744 ATGTACTGGGCCAAAAAGATTCTCGAGTGGACTCAAACTCCCGAGCAGGCGCTCGAGTAT 71803 ||||| ||||| ||||| || || || ||||| |||| || || | || || ||| || Sbjct 405669 ATGTATTGGGCAAAAAAAATCCTGGAATGGACAGAAACGCCGGAAGAAGCTCT-GAGAAT 405611 Query 71804 T-CTATTTATCTAAACGATAGATACAGTCTCGACGGTCGCGATCCTAACGGTTATGTCGG 71862 | || ||||| |||||| |||||||| | || || || ||||| | |||||| || || Sbjct 405610 CGCCATATATCTGAACGATCGATACAGTTTGGATGGCCGAGATCCGAGCGGTTACGTTGG 405551 Query 71863 TTGCATGTGGAGCATTTGCGGTCTTCACGATAGAAGCTTTTTAGAACGTCAAGTGTTTGG 71922 |||||||||| ||| || ||| | || || | | | |||| | || ||||| Sbjct 405550 TTGCATGTGGTCCATCTGTGGTATCCATGACATGGGATGGAAGCAACGAGATGTCTTTGG 405491 Query 71923 TAAAATTCGCTATATGAATCGTAATGGTTGCGAACGCAAGTT 71964 ||||||||||||||||| || ||||| |||| || || Sbjct 405490 GAAAATTCGCTATATGAACTACAAAGGTTGTCAACGAAAATT 405449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478631370709920