Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq18 95.1 3e-14 seq5 86.0 2e-11 >seq18 Length=1446981 Score = 95.1 bits (104), Expect = 3e-14 Identities = 120/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| || | |||||||| | || || ||||| ||||| || || || || || || Sbjct 597835 GCTCAGCAGTTGTGGTTTGCTGTTATTGAATCGCAAATTGAAACTGGCACCCCATACATC 597894 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 |||||||| ||| | |||||||||||||| || || ||| | | ||||| || | Sbjct 597895 TTGTACAAGGATGCCTGCAACCGCAAGTCGAATCAACAGAATTTGGGTACCATCAAATGC 597954 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAG 364275 ||||| | || || |||||| | ||||||| | |||| || ||| Sbjct 597955 AGCAATTTGTGCACAGAGATTGTGGAATACAGCTCTCCAGAAGAG 597999 >seq5 Length=2511979 Score = 86.0 bits (94), Expect = 2e-11 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 22499 TTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGC 22558 |||| ||||| | || ||||| |||||||| ||||| | ||| || |||||||||| Sbjct 2472062 TTGCTTTTGCCGCAGTGGAAGGAATTTTCTTCTCTGGGTCCTTTGCAGCTATCTTTTGGC 2472003 Query 22559 TaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATG 22618 | ||||| || | | ||||| || | || || |||||||| | || |||||| Sbjct 2472002 TTAAAAAGCGAGGTTTGATGCCTGGCTTGACCTTCTCAAATGAACTGATCTCAAGAGATG 2471943 Query 22619 AGGGTCTTCATACCGATTTTGCGTG 22643 ||||| | ||||| ||||| ||||| Sbjct 2471942 AGGGTTTGCATACTGATTTCGCGTG 2471918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303266997855452