Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq25 89.7 4e-13 >seq25 Length=1288025 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 23985 AACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAG 24044 ||||| ||||| | ||||| || ||||| ||||| || | || ||| | || || ||| Sbjct 1056596 AACAAGATGCAGATCTTTGTCAAGACATTGACTGGCAAGACCATCACCCTTGAGGTTGAG 1056655 Query 24045 GCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCC 24104 | || || |||||| | || || |||||| || || || ||||| || || Sbjct 1056656 CCTTCTGATACTATCGAGAATGTTAAGGCCAAGATTCAAGATAAGGAGGGCATTCCACCA 1056715 Query 24105 GATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGAT 24164 ||||| ||| | |||| | | ||||| || || ||||||| | | | | ||| Sbjct 1056716 GATCAGCAGCGTTTGATCTTTGCTGGCAAACAGCTGGAAGATGGTCGTACCTTGTCTGAT 1056775 Query 24165 TATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 |||||||| || || |||||||| | || ||||| | | ||||||||||| Sbjct 1056776 TATAACATCCAGAAGGAATCTACCCTGCACTTAGTCCTCCGTCTGAGAGGAGGA 1056829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429908826163830