Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq25 84.2 2e-11 >seq25 Length=1288025 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || ||||||||||| || |||||||| || | | || | || Sbjct 1060198 AGGACCAAATGAAGAGTGGACTCCTTCTGAATGTTGTAATCCGAAAGAGTACGTCCATCT 1060139 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | ||| || || ||| ||||||| ||||| ||||| ||| | || || ||||| Sbjct 1060138 TCAAGTTGCTTTCCAGCAAAAATAAGACGCTGCTGGTCAGGAGGGATTCCTTCCTTGTCT 1060079 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || ||| || || | | | ||||| ||||| ||| | |||||||| Sbjct 1060078 TGGATCTTAGCT--TTGACGTTCTCAATGGTGTCTGACGGCTCAACTTCGAGGGTGATGG 1060021 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||||| |||| || || || ||||||||||| Sbjct 1060020 TTTTTCCTGTCAAGGTCTTCACGAAAATCTGCAT 1059987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405062396666140