Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq5 168 8e-37 seq18 127 3e-24 >seq5 Length=2511979 Score = 168 bits (186), Expect = 8e-37 Identities = 268/382 (70%), Gaps = 3/382 (1%) Strand=Plus/Plus Query 32643 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAAT 32702 || ||||| ||||| | || |||||||| || | |||||| ||||| || | | Sbjct 2471900 AAGTGTTTGAACATGACGCACGCGAAATCAGTATGCAAACCCTCATCTCTTGAGATCAGT 2471959 Query 32703 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA 32762 || || || || || | || ||||| | || ||||||||||||||||| || | ||| Sbjct 2471960 TCATTTGAGAAGGTCAAGCCAGGCATCAAACCTCGCTTTTTAAGCCAAAAGATAGCTGCA 2472019 Query 32763 AATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA 32822 || || ||||| |||||||||||||| ||||| ||||| |||| | ||| || | ||| Sbjct 2472020 AAGGACCCAGAGAAGAAAATTCCTTCCACTGCGGCAAAAGCAACGATTCTTTCACTGTAA 2472079 Query 32823 CCGGC-GCTGTCATG--TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGC 32879 || || | || |||||||| ||||| || || ||||| | |||||| Sbjct 2472080 GGTGCATCTTTATTGCCAATCCACTTCATTGCCCATTCAGCTTTCTTAGCGATGCAAGGC 2472139 Query 32880 ATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCA 32939 |||||||||| |||||| || || | | ||| ||| || | ||| || ||| Sbjct 2472140 ATTGTCTCTACAGCATTGAAAAGCCTTGTCCTCTCAGCGGAATCCTTGATATAAGTTTCA 2472199 Query 32940 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAG 32999 || | || || |||||||| || || || ||||| ||||| ||||| || || ||||| Sbjct 2472200 ATGAGCAGGCTGTACATTTCAGAGTGGATATTTTCCATGGCAATTTGGAAACCATAGAAA 2472259 Query 33000 CATCTAGCCTCGGTAATCTGTA 33021 || | ||| || | || ||||| Sbjct 2472260 CAGCGAGCTTCAGGAACCTGTA 2472281 >seq18 Length=1446981 Score = 127 bits (140), Expect = 3e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 62992 TTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGA 63051 ||||||||| ||||||||| | ||| ||| || ||||||| |||||||||| || Sbjct 597692 TTCGAACTCTTCTCCCCAAGTGTCAGCCAATCCTGGGCATTCATGAGGACACATCAGTGA 597633 Query 63052 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63111 ||| || || ||| | || ||| |||||| ||||| |||||||| ||||| ||| Sbjct 597632 CCAATCGCCATCAGATTCAACACGTCGCATAAACAGATCGGGAATCCAGAGAGCGTAAAA 597573 Query 63112 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63171 || ||| | | | || ||| || || || ||||| || || | |||||| || | | Sbjct 597572 TAAATCACGCGCACGATTTTCTTCTTTGCCGGTATTTTTCTTCAAATCGAGAAAATCGAA 597513 Query 63172 AATATCAGAATGCCACGGTTCCAAGTATATGGC 63204 | |||||||||||| ||||||||||| || || Sbjct 597512 CACATCAGAATGCCAAGGTTCCAAGTAGATTGC 597480 Score = 114 bits (126), Expect = 2e-20 Identities = 131/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 63473 GCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTC 63532 |||| ||| | ||| |||||||| ||||| ||||| ||||| || || | ||||||||| Sbjct 597075 GCATAAAACAGGGTGGGAGAAGCATGAGTGAACCACTTTTCCGACAGCAAATTGTACGTT 597016 Query 63533 TCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGC 63592 ||||| || | ||| |||||| |||||| || |||| || | ||| | || |||| Sbjct 597015 TCAATGGCAGCGTCAATATCCTCCCCATGAATACCAACTGACACTCTCATCATCAAGTGC 596956 Query 63593 TGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 63648 ||||| | ||| || || | |||||||||||||||||||| || ||||| Sbjct 596955 TGAGGACGTTCCACTGGTTTACCATCAATTTTCAACAAGTAGGATTTCTCTAAAGT 596900 Score = 104 bits (114), Expect = 3e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 63821 TTTTTTGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCC 63880 ||||| ||||||||||| || || || || ||||| | || ||||| |||||||| || Sbjct 596600 TTTTTGGTTTCTTTGTGAAGGTTAGAAACAGCTATGCGTGCAGCTAGGATGGCATAGTCT 596541 Query 63881 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 63940 ||||||| || || || || ||| |||| || || ||| |||||||||| || ||| Sbjct 596540 GGATGTTTAGTGGTCATTGTTGCAGCTGTTTCAGCAGCAAGATTGTCCAATTCAACAGTT 596481 Query 63941 GTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 || |||||| ||| | || | || |||||||| Sbjct 596480 GTAACACCAGGATAGAGACCATTAATCACCTTCAT 596446 Score = 91.5 bits (100), Expect = 2e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 62801 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 62860 ||||| ||||| | ||| || || |||||||| || ||||| |||||||| ||| | Sbjct 597974 ATCTCTGTGCACAAATTGCTGCATTTGATGGTACCCAAATTCTGTTGATTCGACTTGCGG 597915 Query 62861 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAA 62918 || || |||||||| || | ||| |||| || ||||||||||| || ||||| |||| Sbjct 597914 TTGCAGGCATCCTTGTACAAGATGTATGGGGTGCCAGTTTCAATTTGCGATTCAATAA 597857 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 62191 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62250 ||| || |||||||| ||||| || || || ||||||||| || || | ||| | Sbjct 598786 TACCTGGAATTCTCCCGACAAAACCCTGCGGACATAAATATTAGAAGTGTATGCTTCAAT 598727 Query 62251 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 62303 || ||||||||||||| |||||| ||||| || || || ||||||||||||| Sbjct 598726 CGATTCATTATTTCCCAGAATTTGCGCAGTCGAAGCTGTGGGCATAGGTGCCA 598674 Score = 84.2 bits (92), Expect = 3e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 62456 TCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTA 62515 ||||| || ||||| || || || || ||||||||||||||||| || || | ||| Sbjct 598450 TCAGCGAGCTCACACGAAGCTTCCAAAGCGCCGTAATAAATGGTTTCAAAAATGTGCTTG 598391 Query 62516 TTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCT 62575 ||||| |||||| || || |||||||| || | |||||||| || || || Sbjct 598390 TTTAGCAATTGCGCCTCTTCACTGTCAAATGGGTAGCGCATCAGAATAAAAGCATCCGCC 598331 Query 62576 AATCCTTGAACACCAATACCGATAGG 62601 || |||||||| ||||| || || || Sbjct 598330 AAGCCTTGAACTCCAATTCCAATTGG 598305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633590924805600