Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq90 86.0 5e-12 >seq90 Length=518052 Score = 86.0 bits (94), Expect = 5e-12 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 50983 ACGTTAAACTTACGCTTACAGCCCGCGTAGTTCATATACCTGATTCTGCCAAAAATTTTG 51042 |||| ||| || || | ||| || |||||||||||| | ||| | ||||| | | Sbjct 405443 ACGTCAAATTTTCGTTGACAACCTTTGTAGTTCATATAGCGAATTTTCCCAAAGACATCT 405502 Query 51043 CGTTCTTTGAACGGCCTGTCGTGCACACCGCAAATTGACCACATACAACCCACATAATTG 51102 |||| || | | |||| || | ||| || || |||||||| ||||| || ||| | Sbjct 405503 CGTTGCTTCCATCCCATGTCATGGATACCACAGATGGACCACATGCAACCAACGTAACCG 405562 Query 51103 TTAGGATCGCGACCATCCACGCTGTAATGATCGTTTAGAAATATGGC 51149 | ||||| || ||||||| ||||| ||||||| ||| ||||||| Sbjct 405563 CTCGGATCTCGGCCATCCAAACTGTATCGATCGTTCAGATATATGGC 405609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433300611774590