Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq5 152 6e-32 seq18 105 7e-18 seq86 87.8 2e-12 seq17 84.2 2e-11 >seq5 Length=2511979 Score = 152 bits (168), Expect = 6e-32 Identities = 255/366 (70%), Gaps = 2/366 (1%) Strand=Plus/Plus Query 93080 TTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTG 93139 ||| |||| | |||||| || || ||||| ||||| || |||| ||| |||| ||||| Sbjct 2471906 TTGAACATGACGCACGCGAAATCAGTATGCAAACCCTCATCTCTTGAGATCAGTTCATTT 2471965 Query 93140 CTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTA 93199 ||| || || || || | || ||||| || || |||||||| || | ||||| Sbjct 2471966 GAGAAGGTCAAGCCAGGCATCAAACCTCGCTTTTTAAGCCAAAAGATAGCTGCAAAGGAC 2472025 Query 93200 CCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCG 93259 ||||| || || || |||||||| || ||||| || || || | ||| || ||| Sbjct 2472026 CCAGAGAAGAAAATTCCTTCCACTGCGGCAAAAGCAACGATTCTTTCACTGTAAGGTGCA 2472085 Query 93260 GAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTT 93319 ||| ||| ||||| || | ||||| || ||||| || || ||||| | ||| Sbjct 2472086 TCTTTATTGCCAATCCACTTCATTGCCCATTCAGCTTTCTTAGCGATGCAAGGCATTGTC 2472145 Query 93320 TCGATAGCGTTAAATAGG-TAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAA 93378 || | ||| || || || | || | ||| | ||||| || || || || || | Sbjct 2472146 TCTACAGCATTGAAAAGCCTTGTC-CTCTCAGCGGAATCCTTGATATAAGTTTCAATGAG 2472204 Query 93379 CAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCT 93438 ||| ||||||||||| |||| ||| ||||| ||||||||||| || |||||||| | Sbjct 2472205 CAGGCTGTACATTTCAGAGTGGATATTTTCCATGGCAATTTGGAAACCATAGAAACAGCG 2472264 Query 93439 AGCTTC 93444 |||||| Sbjct 2472265 AGCTTC 2472270 Score = 100 bits (110), Expect = 3e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 93581 TTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCC 93640 ||||||||||| |||||||| |||||||||| || |||||||||||||||||||| | | Sbjct 2472528 TTTGAAAGATCAACTTCTTCAGCAGTCCAAAAAGAAGCTTCTGCTTTTTTGTACATTTGC 2472587 Query 93641 CATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTA 93688 || || || || || || || || |||| ||||| || | |||||| Sbjct 2472588 CAGATATCATGGTACTGGATGGGGAATAGCACAAATCGGCTGGGGTTA 2472635 Score = 91.5 bits (100), Expect = 2e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 93451 CTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGC 93510 ||| |||||||||| ||| ||||| || |||||||||||||| |||||||| || || || Sbjct 2472340 CTGGACTTCTTGAGCAAACCTCTCAACAAGATTTTCATTGACAATACCATCAGAAGCAGC 2472399 Query 93511 aaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATC 93570 |||||| || | || ||| | ||| ||| ||||| | | || ||||||||||| Sbjct 2472400 AAAAAAGGCAAGTACATGAGAAACAAAGTGTCGCTCATTAGGCTGGAGATTATCCCAATC 2472459 >seq18 Length=1446981 Score = 105 bits (116), Expect = 7e-18 Identities = 79/89 (89%), Gaps = 3/89 (3%) Strand=Plus/Plus Query 126258 TATTTACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT-TCCCTC 126316 ||||| || ||||||||||||||||| |||||||||||| |||||||||||| ||| | Sbjct 436706 TATTTGCAC-CAGGTTGGCCGAGTGGTTTAAGGCGCCAGACTTAAGATCTGGTCTCCGTA 436764 Query 126317 GGGA-GCGTGGGTTCGAACCCCACACCTG 126344 ||| |||||||||||||||||||||||| Sbjct 436765 TGGAGGCGTGGGTTCGAACCCCACACCTG 436793 Score = 96.9 bits (106), Expect = 4e-15 Identities = 71/79 (90%), Gaps = 3/79 (4%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT-TCCCTCGGGAG-CGTG 126325 ||||||||||||||||| |||||||||||| |||||||||||| ||| | ||| |||| Sbjct 588715 CAGGTTGGCCGAGTGGT-TAAGGCGCCAGACTTAAGATCTGGTCTCCGTATAGAGACGTG 588657 Query 126326 GGTTCGAACCCCACACCTG 126344 ||||||||||||||||||| Sbjct 588656 GGTTCGAACCCCACACCTG 588638 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/79 (89%), Gaps = 3/79 (4%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT-TCCCTCGGGAG-CGTG 126325 ||||||||||||||||| |||||||||||| |||||||||||| || | ||| |||| Sbjct 427253 CAGGTTGGCCGAGTGGT-TAAGGCGCCAGACTTAAGATCTGGTCTCTGTATAGAGACGTG 427311 Query 126326 GGTTCGAACCCCACACCTG 126344 ||||||||||||||||||| Sbjct 427312 GGTTCGAACCCCACACCTG 427330 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/79 (89%), Gaps = 3/79 (4%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT-TCCCTCGGGAG-CGTG 126325 ||||||||||||||||| |||||||||||| |||||||||||| || | ||| |||| Sbjct 459677 CAGGTTGGCCGAGTGGT-TAAGGCGCCAGACTTAAGATCTGGTCTCTGTATAGAGACGTG 459619 Query 126326 GGTTCGAACCCCACACCTG 126344 ||||||||||||||||||| Sbjct 459618 GGTTCGAACCCCACACCTG 459600 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/79 (89%), Gaps = 3/79 (4%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT-TCCCTCGGGAG-CGTG 126325 ||||||||||||||||| |||||||||||| |||||||||||| || | ||| |||| Sbjct 465417 CAGGTTGGCCGAGTGGT-TAAGGCGCCAGACTTAAGATCTGGTCTCTGTATAGAGACGTG 465475 Query 126326 GGTTCGAACCCCACACCTG 126344 ||||||||||||||||||| Sbjct 465476 GGTTCGAACCCCACACCTG 465494 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/79 (89%), Gaps = 3/79 (4%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT-TCCCTCGGGAG-CGTG 126325 ||||||||||||||||| |||||||||||| |||||||||||| || | ||| |||| Sbjct 481951 CAGGTTGGCCGAGTGGT-TAAGGCGCCAGACTTAAGATCTGGTCTCTGTATAGAGACGTG 481893 Query 126326 GGTTCGAACCCCACACCTG 126344 ||||||||||||||||||| Sbjct 481892 GGTTCGAACCCCACACCTG 481874 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/79 (89%), Gaps = 3/79 (4%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT-TCCCTCGGGAG-CGTG 126325 ||||||||||||||||| |||||||||||| |||||||||||| || | ||| |||| Sbjct 589000 CAGGTTGGCCGAGTGGT-TAAGGCGCCAGACTTAAGATCTGGTCTCTGTATAGAGACGTG 589058 Query 126326 GGTTCGAACCCCACACCTG 126344 ||||||||||||||||||| Sbjct 589059 GGTTCGAACCCCACACCTG 589077 Score = 89.7 bits (98), Expect = 6e-13 Identities = 73/85 (86%), Gaps = 3/85 (4%) Strand=Plus/Plus Query 126262 TACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT-TCCCTCGGGA 126320 |||| ||||||||||||||||| |||||||||||| ||||| |||||| || | || Sbjct 445957 TACAACCAGGTTGGCCGAGTGGT-TAAGGCGCCAGACTTAAGGTCTGGTCTCTGTATAGA 446015 Query 126321 G-CGTGGGTTCGAACCCCACACCTG 126344 | ||||||||||||||||||||||| Sbjct 446016 GACGTGGGTTCGAACCCCACACCTG 446040 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/79 (87%), Gaps = 3/79 (4%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT-TCCCTCGGGAG-CGTG 126325 ||||||||||||||||| |||||||||||| |||||||||||| || | ||| |||| Sbjct 435140 CAGGTTGGCCGAGTGGT-TAAGGCGCCAGACTTAAGATCTGGTCTCTGTATAGAGACGTG 435198 Query 126326 GGTTCGAACCCCACACCTG 126344 ||||||||| ||||||||| Sbjct 435199 GGTTCGAACACCACACCTG 435217 >seq86 Length=533890 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/92 (84%), Gaps = 3/92 (3%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT-TCCCTCGGGAG-CGTG 126325 ||||||||||||||||| |||||||||||| ||||| |||||| || | ||| |||| Sbjct 411268 CAGGTTGGCCGAGTGGT-TAAGGCGCCAGACTTAAGTTCTGGTCTCTAACAAGAGACGTG 411326 Query 126326 GGTTCGAACCCCACACCTGACAAATTATTATT 126357 ||||||||||||||||||| ||| ||||| Sbjct 411327 GGTTCGAACCCCACACCTGGTAAAACTTTATT 411358 >seq17 Length=1546548 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/82 (85%), Gaps = 9/82 (11%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGG----GAG-C 126322 ||||||||||||||||| |||||||||||| |||||||||||| ||| | ||| | Sbjct 953024 CAGGTTGGCCGAGTGGT-TAAGGCGCCAGACTTAAGATCTGGT---CTCTGAATAGAGAC 952969 Query 126323 GTGGGTTCGAACCCCACACCTG 126344 |||||||||| ||||||||||| Sbjct 952968 GTGGGTTCGATCCCCACACCTG 952947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556824701498640