Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq25 105 6e-18 seq11 91.5 1e-13 >seq25 Length=1288025 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || || || || ||||| |||| || ||||| || | | Sbjct 1059987 ATGCAGATTTTCGTGAAGACCTTGACAGGAAAAACCATCACCCTCGAAGTTGAGCCGTCA 1060046 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | ||||| || || ||||||||||| || || || || || || Sbjct 1060047 GACACCATTGAGAACGTCAAAGCTAAGATCCAAGACAAGGAAGGAATCCCTCCTGACCAG 1060106 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| ||||| || || || | || ||| || || | || ||||||||| Sbjct 1060107 CAGCGTCTTATTTTTGCTGGAAAGCAACTTGAAGATGGACGTACTCTTTCGGATTACAAC 1060166 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTT 22449 ||||| || || ||||| | ||||| || | || | ||||| ||| || Sbjct 1060167 ATTCAGAAGGAGTCCACTCTTCATTTGGTCCTTCGTCTTCGCGGTGGTATT 1060217 Score = 104 bits (114), Expect = 2e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 22321 GGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGC 22380 || || ||||||||||| |||||||| || || ||||||||||| || |||||| || Sbjct 1057112 GGCATCCCACCCGATCAGCAACGTCTCATCTTCGCCGGCAAACAATTGGAGGATGGTCGT 1057171 Query 22381 ACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGC 22440 || | ||||| ||||||||||| || || || || ||||||| || || || || ||| Sbjct 1057172 ACTCTGTCCGACTACAACATTCAGAAGGAGTCAACATTACATTTGGTATTACGTTTACGC 1057231 Query 22441 GGAGG 22445 ||||| Sbjct 1057232 GGAGG 1057236 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 22321 GGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGC 22380 ||||| ||||| ||||| || ||||| || |||||||| |||||| | || ||| || Sbjct 1058284 GGTATCCCACCTGATCAGCAGCGTCTCATCTTTGCCGGTAAACAGCTGGAAGATGGTCGT 1058343 Query 22381 ACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGC 22440 ||| | || ||||||||||| || || || || ||| | || || || ||||| ||| | Sbjct 1058344 ACCTTGTCAGATTACAACATCCAGAAGGAGTCTACCCTTCACTTGGTCTTGCGTTTGAGA 1058403 Query 22441 GGAGGT 22446 |||||| Sbjct 1058404 GGAGGT 1058409 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 22321 GGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGC 22380 ||||| ||||| ||||| || ||||| || |||||||| |||||| | || ||| || Sbjct 1059861 GGTATCCCACCTGATCAGCAGCGTCTCATCTTTGCCGGTAAACAGCTGGAAGATGGTCGT 1059920 Query 22381 ACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGC 22440 || | || ||||||||||| ||||| || || || | || || ||| |||| ||| | Sbjct 1059921 ACATTGTCAGATTACAACATCCAAAAGGAGTCTACTCTCCACTTGGTTCTGCGTTTGAGA 1059980 Query 22441 GGAGGT 22446 |||||| Sbjct 1059981 GGAGGT 1059986 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 22321 GGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGC 22380 ||||| |||||||| || || ||||| || |||||||| || ||| | |||||| || Sbjct 1058683 GGTATCCCACCCGACCAGCAGCGTCTCATCTTTGCCGGAAAGCAGCTCGAGGATGGTCGT 1058742 Query 22381 ACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGC 22440 ||| | |||||||||||||| ||||| || || || | || || ||| | || | || Sbjct 1058743 ACCTTGTCCGATTACAACATCCAAAAGGAGTCGACTCTTCACTTGGTTCTTCGCCTCCGA 1058802 Query 22441 GGAGGT 22446 || ||| Sbjct 1058803 GGTGGT 1058808 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 22321 GGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGC 22380 |||||||| |||||||| || ||||| || || || || || ||||| || ||| || Sbjct 1059073 GGTATTCCTCCCGATCAGCAGCGTCTGATTTTCGCTGGTAAGCAGTTGGAAGATGGTCGT 1059132 Query 22381 ACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGC 22440 || | ||||| |||||||||||||| || || ||| | || || ||| | || | ||| Sbjct 1059133 ACTCTATCCGACTACAACATTCAAAAGGAGTCAACCCTCCACTTGGTTCTTCGCCTCCGC 1059192 Query 22441 GGAGGT 22446 || ||| Sbjct 1059193 GGTGGT 1059198 >seq11 Length=2187803 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || || || || || | || ||||| || |||| ||||| || || | Sbjct 911130 AAAATGCAGATCTTCGTCAAGACCCTGACGGGTAAGACCATCACCCTTGAGGTCGAGCCT 911189 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | || || |||| |||||| ||||||||||| ||||| || || || Sbjct 911190 TCAGACACCATCGAAAATGTCAAGGCAAAAATCCAAGACAAGGAAGGTATCCCTCCTGAC 911249 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || || | || ||||| |||||||| | || ||| || || | || || ||| Sbjct 911250 CAGCAGCGATTGATCTTTGCTGGCAAACAACTTGAAGATGGACGTACTCTATCTGACTAC 911309 Query 22396 AACATTCAAAAAG 22408 |||||||| |||| Sbjct 911310 AACATTCAGAAAG 911322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419701471354090