Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq25 179 7e-40 seq11 145 1e-29 seq4542 95.1 2e-14 seq110 93.3 8e-14 seq121 84.2 4e-11 >seq25 Length=1288025 Score = 179 bits (198), Expect = 7e-40 Identities = 180/234 (77%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 68228 TTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATA 68287 |||| | || |||||||| || | ||||| || || |||||||| || || ||||| || Sbjct 1060220 TTAAATACCACCGCGAAGACGAAGGACCAAATGAAGAGTGGACTCCTTCTGAATGTTGTA 1060161 Query 68288 ATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTC 68347 ||| || || || | |||||||| | ||||| || || || || || | || ||||| Sbjct 1060160 ATCCGAAAGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGCTGCTGGTC 1060101 Query 68348 GGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGA 68407 || || || |||||||||||||| ||||| || |||||| ||| |||||||||| | Sbjct 1060100 AGGAGGGATTCCTTCCTTGTCTTGGATCTTAGCTTTGACGTTCTCAATGGTGTCTGACGG 1060041 Query 68408 TTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||| | ||||||||||||||| || | |||||| ||||| |||||||| Sbjct 1060040 CTCAACTTCGAGGGTGATGGTTTTTCCTGTCAAGGTCTTCACGAAAATCTGCAT 1059987 Score = 134 bits (148), Expect = 3e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||| | || || | || ||||| || || || || || |||||||||||||| | Sbjct 1056830 TTCCTCCTCTCAGACGGAGGACTAAGTGCAGGGTAGATTCCTTCTGGATGTTATAATCAG 1056771 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | | || | |||||||| | ||| || || || || || | | || || || |||| Sbjct 1056770 ACAAGGTACGACCATCTTCCAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGATCTGGTG 1056711 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 ||||||| ||||| ||||||||||| ||||| || |||||| || || | | || | Sbjct 1056710 GAATGCCCTCCTTATCTTGAATCTTGGCCTTAACATTCTCGATAGTATCAGAAGGCTCAA 1056651 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || | ||||||||| || || || | |||||||| || |||||||| Sbjct 1056650 CCTCAAGGGTGATGGTCTTGCCAGTCAATGTCTTGACAAAGATCTGCAT 1056602 Score = 102 bits (112), Expect = 2e-16 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 ||||| |||||||| || || ||||||||| ||| || ||||| | | ||| ||||| Sbjct 1058513 CCTTCTTTGTCTTGGATTTTAGCCTTGACGTTCTCAATCGTGTCGGAAGGTTCAACTTCA 1058454 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||||||||| ||||| ||||| ||||||||||| |||||||| Sbjct 1058453 AGGGTGATGGTCTTTCCAGTGAGAGTCTTGACGAAGATCTGCAT 1058410 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 ||||| |||||||| ||||| ||||||||| ||| |||||||| | || ||| ||||| Sbjct 1058912 CCTTCTTTGTCTTGGATCTTAGCCTTGACGTTCTCAATGGTGTCCGATGGTTCGACTTCG 1058853 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || || || ||||| || | |||||||||||| |||||||| Sbjct 1058852 AGCGTAATAGTCTTTCCAGTCAAGGTCTTGACGAAAATCTGCAT 1058809 Score = 96.9 bits (106), Expect = 6e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | |||||||| || || ||||| ||||||||||| |||||||| Sbjct 1058807 CCACCTCGGAGGCGAAGAACCAAGTGAAGAGTCGACTCCTTTTGGATGTTGTAATCGGAC 1058748 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||| || | |||||| ||||| || ||||| | || ||||||||||| Sbjct 1058747 AAGGTACGACCATCCTCGAGCTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGG 1058688 Query 68355 ATGCCT 68360 || ||| Sbjct 1058687 ATACCT 1058682 Score = 89.7 bits (98), Expect = 9e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 ||||| |||||||||||||| || || ||| |||||| ||||| | | ||| ||||| Sbjct 1057341 CCTTCTTTGTCTTGAATCTTGGCTTTAACGTTCTCGATAGTGTCAGAAGGTTCAACTTCG 1057282 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | |||||||| ||||| || || || || ||||| |||||||| Sbjct 1057281 AGAGTGATGGTCTTTCCAGTAAGAGTTTTAACGAAAATCTGCAT 1057238 Score = 89.7 bits (98), Expect = 9e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 ||||| ||||||||||| || ||||| ||| ||| || || || | || || ||||| Sbjct 1058114 CCTTCTTTGTCTTGAATTTTGGCCTTAACGTTCTCAATTGTATCCGATGGCTCAACTTCA 1058055 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||||||||| ||||| || || ||||| ||||| |||||||| Sbjct 1058054 AGGGTGATGGTCTTTCCGGTAAGAGTCTTCACGAAAATCTGCAT 1058011 Score = 89.7 bits (98), Expect = 9e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| || |||||||| || || || ||| |||||||||||| | || ||| ||| Sbjct 1059305 ATACCTTCTTTATCTTGAATTTTCGCTTTAACGTTCTCGATGGTGTCGGATGGTTCAACT 1059246 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || ||||| ||||| || |||||||| || || |||||||| Sbjct 1059245 TCAAGAGTAATGGTCTTTCCAGTCAGGGTCTTCACAAAGATCTGCAT 1059199 Score = 87.8 bits (96), Expect = 3e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || || ||||||||||||||||| ||||| || Sbjct 1057627 CCACCACGGAGACGGAGAACCAAGTGAAGAGTCGACTCTTTTTGGATGTTGTAATCAGAC 1057568 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||| | |||||| || ||||| || || | || || ||||| ||| Sbjct 1057567 AAAGTACGGCCATCTTCGAGCTGCTTTCCAGCGAAAATTAGACGCTGCTGATCGGGCGGA 1057508 Query 68355 ATGCCT 68360 || ||| Sbjct 1057507 ATACCT 1057502 Score = 84.2 bits (92), Expect = 4e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 ||||| ||||||||||| || ||||| || ||| || || || | || || ||||| Sbjct 1059693 CCTTCTTTGTCTTGAATTTTGGCCTTAACATTCTCAATTGTATCCGATGGCTCCACTTCA 1059634 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||||||||| ||||| || || ||||| ||||| |||||||| Sbjct 1059633 AGGGTGATGGTCTTTCCGGTAAGAGTCTTCACGAAAATCTGCAT 1059590 Score = 84.2 bits (92), Expect = 4e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 |||| |||||||| || || ||||| ||||||||||| ||||| || | ||| | ||| Sbjct 1059973 CGCAGAACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCTGACAATGTACGACCA 1059914 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCT 68360 ||||| | ||| || ||||| || ||||| | || || || ||||| || ||| Sbjct 1059913 TCTTCCAGCTGTTTACCGGCAAAGATGAGACGCTGCTGATCAGGTGGGATACCT 1059860 >seq11 Length=2187803 Score = 145 bits (160), Expect = 1e-29 Identities = 149/195 (76%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 68272 CTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATA 68331 |||| || ||||| || || || || || | |||||||| | || || || || || | Sbjct 911322 CTTTCTGAATGTTGTAGTCAGATAGAGTACGTCCATCTTCAAGTTGTTTGCCAGCAAAGA 911263 Query 68332 TGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCT 68391 | | || || ||||| || || || |||||||||||||| || ||||||||||| | Sbjct 911262 TCAATCGCTGCTGGTCAGGAGGGATACCTTCCTTGTCTTGGATTTTTGCCTTGACATTTT 911203 Query 68392 CGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451 |||||||||||| | || || || | ||||||||| || ||||| ||||||||||||| Sbjct 911202 CGATGGTGTCTGAAGGCTCGACCTCAAGGGTGATGGTCTTACCCGTCAGGGTCTTGACGA 911143 Query 68452 ATATCTGCATTATGC 68466 | ||||||||| ||| Sbjct 911142 AGATCTGCATTTTGC 911128 >seq4542 Length=1116 Score = 95.1 bits (104), Expect = 2e-14 Identities = 60/65 (92%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||| |||||||||||| |||||||||| ||||||| ||||||||||||||||||||| Sbjct 430 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGTGGGTTCGAGC 489 Query 84516 CCCAC 84520 ||||| Sbjct 490 CCCAC 494 >seq110 Length=421644 Score = 93.3 bits (102), Expect = 8e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 268535 TTTTGAGGGATTTCTCGGACTTTGCCAAAGAGCTCGGAGGTCGATGCTTGGTAGAACTTT 268594 || ||||| | |||| | ||||| ||| | ||||| || || || ||||||||||| || Sbjct 51139 TTCTGAGGAACTTCTTGAACTTTTCCATAAAGCTCTGACGTAGAAGCTTGGTAGAATTTA 51080 Query 268595 GTTGTTTTTTCGAGACCGCAGATTCGGATTGCCTCGAGCAAACGAAGAGTTCCCATGCCA 268654 | ||||| ||||| || | |||| || || || | || | ||||||| || Sbjct 51079 ACAGACTTTTCCAGACCACAAGTCCGGACAGCATCAAGAATTCGTAATGTTCCCAAAGCA 51020 Query 268655 TCCACGTCCGCTGTATACTCCGGCATCTCGAATGACACCTGGACATGGCTCTGGGCGCCC 268714 || || | || ||||| || | || || || || || | |||||||||||| || ||| Sbjct 51019 TCAACATTGGCGGTATATTCAGCCAAATCAAAAGATACTTTGACATGGCTCTGAGCTCCC 50960 Query 268715 AGGTTATAAACCTCATCCGGTTTGAC 268740 | |||||| | ||| || ||||| Sbjct 50959 AAGTTATAGATTTCAGTGGGCTTGAC 50934 Score = 89.7 bits (98), Expect = 9e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 268364 CGAGTGATTTTTCGGGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGG 268423 || ||||| |||| ||| ||||| ||||| ||||| |||| || || ||||||||||| Sbjct 51381 CGTGTGATCTTTCTGGTTACGAAGGTCTCACCACGACGAGGACTTTCATGGTTGAAGAGA 51322 Query 268424 ATGCCGTTGCACGCGAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCA 268483 || || || || ||||||||| || ||||| ||||| || || |||| || ||| Sbjct 51321 ATACCATTACAAGCGAACATGTTGTAAGCCTCTCGGTAATTAGTTACGATCCAATAGGCA 51262 Query 268484 AACATCTTTGCAAC 268497 | | ||| ||||| Sbjct 51261 TAAAGCTTAGCAAC 51248 >seq121 Length=408865 Score = 84.2 bits (92), Expect = 4e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 176280 TGAAGGCGGGAACCGAATTGTCCGCGAGGAAGAAGCAAATTGATGTTATTCGAACCCACG 176339 || ||||| | ||| || || || |||||||||||||||||||| || || || ||| Sbjct 300055 TGGAGGCGAGTACCAAACTGGCCATTGGGAAGAAGCAAATTGATGTTGTTGGATCCGACG 300114 Query 176340 TAGTCTTGGGCCATTCCGACTATGGCGCCCTGGAGAGACGCCTCGCCGTGGTGATAGCCG 176399 ||||||| |||| || | || | |||| | ||| ||||||||||| || || | Sbjct 300115 AAGTCTTGAGCCAAACCAATGATTGTGCCCATCAAAGAAGCCTCGCCGTGATGGTATGCC 300174 Query 176400 GCGTTCTCACTTGTGTATCCGGCAAACTGCGCGACTTTGATTTCTT 176445 | || |||| | | || || || || ||||| ||||| |||| Sbjct 300175 GAGTGCTCAGCTACAGAGCCAGCCAATTGGGCGACCTTGATCTCTT 300220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921562655827920