Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_008953.1 Length=3935 Score E Sequences producing significant alignments: (Bits) Value seq13 98.7 2e-17 seq229 87.8 4e-14 seq58 87.8 4e-14 >seq13 Length=1912767 Score = 98.7 bits (108), Expect = 2e-17 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 3367 TGTACTTTTCACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCATC 3426 || ||||| |||| | ||| | |||||| |||| || |||| | || |||||| Sbjct 1656759 TGCACTTTCAACAAGTTCGGCACGTCGGGCGAGGTGGAGAAGCACGACGCCCTGTGCATC 1656818 Query 3427 CTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTC 3480 |||||| |||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 1656819 CTCCCGCTCAACGTGGTCAACGAAAAGATCTACATCTTCCTCTGGTTCTGGTTC 1656872 >seq229 Length=133180 Score = 87.8 bits (96), Expect = 4e-14 Identities = 115/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 3366 ATGTACTTTTCACAAATACGGTCCTTCGGGCTCCCTGGAAAACTA-CGAGGGACTCTGCA 3424 ||| ||||| ||||||| ||||||||| || | | || || ||| || || ||| Sbjct 68555 ATGCACTTTCCACAAATTCGGTCCTTCTGG-TACGACGACGCGTATCGACGGCCTGTGCG 68613 Query 3425 TCCTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTCTACG 3484 |||| || |||| | |||||||||||||| ||| |||||||||||||||||||| | Sbjct 68614 TCCTTCCTTTGAACATTGTCAACGAGAAGATTTACGTTTTCCTCTGGTTCTGGTTCATCC 68673 Query 3485 TGCTAGCCATCATCAGCGGTATCGTTGTTCTGTACCG 3521 || | || | | |||||| | | | |||||||| Sbjct 68674 TGTTGGCGGTGGTGAGCGGTTTGGCGCTGCTGTACCG 68710 >seq58 Length=747206 Score = 87.8 bits (96), Expect = 4e-14 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 3418 CTCTGCATCCTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGG 3477 ||||||||||| ||| |||| | |||||||||||||| ||||||||||||||||||||| Sbjct 190237 CTCTGCATCCTGCCGTTGAACATCGTCAACGAGAAGATTTACATTTTCCTCTGGTTCTGG 190296 Query 3478 TTC 3480 ||| Sbjct 190297 TTC 190299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12479292111000