Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq25 116 3e-21 seq11 100 2e-16 >seq25 Length=1288025 Score = 116 bits (128), Expect = 3e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 114151 AAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAAT 114210 ||||||| || || || | | || ||||| | || || || || ||||||||||||| Sbjct 1060218 AAATACCACCGCGAAGACGAAGGACCAAATGAAGAGTGGACTCCTTCTGAATGTTGTAAT 1060159 Query 114211 CGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCG 114270 | | |||||| |||||||||||| || ||||| | || |||||||| ||||| | Sbjct 1060158 CCGAAAGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGCTGCTGGTCAG 1060099 Query 114271 GAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATT 114330 |||| || ||||| ||||| ||||| ||| | | |||| |||||| | | | Sbjct 1060098 GAGGGATTCCTTCCTTGTCTTGGATCTTAGCTTTGACGTTCTCAATGGTGTCTGACGGCT 1060039 Query 114331 CGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || || | ||| | ||||| || |||| || || || ||||||||||| Sbjct 1060038 CAACTTCGAGGGTGATGGTTTTTCCTGTCAAGGTCTTCACGAAAATCTGCAT 1059987 Score = 93.3 bits (102), Expect = 4e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | || | ||| || || || | ||||| ||||| || |||||||||||| Sbjct 1059591 ATACCACCTCTTAAACGCAAGACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCG 1059532 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||||||| |||||| || || ||||||||| | || | |||||| || || ||| Sbjct 1059531 GACAGAGTACGACCATCTTCCAGCTGCTTACCAGCGAAAATTAAACGCTGCTGATCGGGA 1059472 Query 114273 GGAATGCCT 114281 ||||| ||| Sbjct 1059471 GGAATACCT 1059463 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || |||| | || || ||||||| || || || || ||||||||||| ||| Sbjct 1057239 ATGCCTCCGCGTAAACGTAATACCAAATGTAATGTTGACTCCTTCTGAATGTTGTAGTCG 1057180 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||||||| ||| || | |||||| || ||| |||||||||| || || || || Sbjct 1057179 GACAGAGTACGACCATCCTCCAATTGTTTGCCGGCGAAGATGAGACGTTGCTGATCGGGT 1057120 Query 114273 GGAATGCCT 114281 || |||||| Sbjct 1057119 GGGATGCCT 1057111 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| || || | || || |||||||| ||||||||||| Sbjct 1057630 ATACCACCACGGAGACGGAGAACCAAGTGAAGAGTCGACTCTTTTTGGATGTTGTAATCA 1057571 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || |||||| |||||| || || || |||||| | || |||||||| || || || Sbjct 1057570 GACAAAGTACGGCCATCTTCGAGCTGCTTTCCAGCGAAAATTAGACGCTGCTGATCGGGC 1057511 Query 114273 GGAATGCCT 114281 ||||| ||| Sbjct 1057510 GGAATACCT 1057502 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | | ||| || || | || || || |||||||||||||| ||| Sbjct 1059200 ATACCACCGCGGAGGCGAAGAACCAAGTGGAGGGTTGACTCCTTTTGAATGTTGTAGTCG 1059141 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||||| |||||| | || ||||||||| | || |||||||| || || ||| Sbjct 1059140 GATAGAGTACGACCATCTTCCAACTGCTTACCAGCGAAAATCAGACGCTGCTGATCGGGA 1059081 Query 114273 GGAATGCCT 114281 ||||| ||| Sbjct 1059080 GGAATACCT 1059072 >seq11 Length=2187803 Score = 100 bits (110), Expect = 2e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 114193 CTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGA 114252 |||| ||||||||||| || | |||||| ||||||||||||||| ||||| ||| Sbjct 911322 CTTTCTGAATGTTGTAGTCAGATAGAGTACGTCCATCTTCAAGTTGTTTGCCAGCAAAGA 911263 Query 114253 TGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTT 114312 | | ||||| ||||| ||||| || ||||| ||||| || ||| || | | || Sbjct 911262 TCAATCGCTGCTGGTCAGGAGGGATACCTTCCTTGTCTTGGATTTTTGCCTTGACATTTT 911203 Query 114313 CAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 114372 | | |||||| | | ||||| || | ||| | || || || ||||| || || || | Sbjct 911202 CGATGGTGTCTGAAGGCTCGACCTCAAGGGTGATGGTCTTACCCGTCAGGGTCTTGACGA 911143 Query 114373 AAATCTGCAT 114382 | |||||||| Sbjct 911142 AGATCTGCAT 911133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420107845667832