Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_009237.1 Length=37446 Score E Sequences producing significant alignments: (Bits) Value seq3937 161 2e-35 >seq3937 Length=1273 Score = 161 bits (178), Expect = 2e-35 Identities = 328/477 (69%), Gaps = 15/477 (3%) Strand=Plus/Minus Query 29780 CACGTACTCGGTGTAAATCCAGTCGCTCGCGTGGTCGGAGATTTCGTAGCTCCACACACG 29839 ||| ||| || | | || ||| |||| ||| |||| | |||||||||||||| || Sbjct 754 CACATACATGGCGAAGATGCAGCCGCTGTTGTGATCGGTAACCTCGTAGCTCCACACGCG 695 Query 29840 ATCCG--CAGCGATCCGGGCGAGGTTCTTCGGCTTGTTCTTGTAGAACTCAGCGTGATCC 29897 ||| | | || || ||||||||| ||||||||||||| ||||| | ||| Sbjct 694 --CCGGTCCTCAATGCGCTTGAGGTTCTTGGGCTTGTTCTTGTTGAACTTTTTGGCCTCC 637 Query 29898 ATCACGCGAAGCCCGTTCGCACGCGCGTCGGCGCTAGGCTTCAGGTAATACAGCACGCAC 29957 ||||| | || || || || || || || | | || |||||| ||||| |||||| Sbjct 636 ATCACCTGCAGGCCCATCTCAGCCGGGTTGG---TTGTCTCCAGGTAGTACAGGACGCAC 580 Query 29958 AGGCTCGCGTCGATCTGCCATACGTGATTCGGATGCAGGCTCGCCAGCTCGGTCACCGGT 30017 ||||| |||||||||||||| ||||| || || |||||||| |||||| | | ||| Sbjct 579 AGGCTGGCGTCGATCTGCCAGACGTGGTTGGGGTGCAGGCTGCGCAGCTCCCGCGCTGGT 520 Query 30018 GCCGG-TGCGAGCAACTGGTCGGGATGCACGCCGTACATGCGCAGCGCGCGTTGAATCGC 30076 || || ||| |||| |||||| || |||| || || ||||||| || || || || Sbjct 519 GCAGGCTGC-AGCAGCTGGTCAGGGTGCAGCCCATAGATGCGCATTGCTCGGGCTATGGC 461 Query 30077 GCTATCGGACAGCG-GCCGCAGTTCGCCCGTGGACTCG--TCGAGGAATTCCGCCCGGAT 30133 ||| || |||| ||| |||||||||| |||| |||| | || || ||||| Sbjct 460 GCTTGTCGAGAGCGCTTTGCA-TTCGCCCGTG--CTCGGATCGACGCGCTCAGCGCGGAT 404 Query 30134 CATTCCATTCGCGCGCAGGGTTTGGACTGCGTCGCCGACCGAATACAAGCGCTTACCGTT 30193 | ||||| ||||||| | |||||||| | | | || | |||||| ||||| Sbjct 403 CGCCCCATTGGCGCGCAACACTGTGACTGCGTGATCAATGGTGTAGAGGCGCTTTCCGTT 344 Query 30194 CTTCCGGGTCGACTCGATCAGCGTCGCGGAAATCAACATGGCTTCGTCGCGCGTCAG 30250 ||| || | ||| || | | | | | | |||| |||| || ||||| || || Sbjct 343 CTTGCGCATGCCCTCCATGACCATGGTGCAGATCAGTTTGGCCTCTTCGCGTGTGAG 287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119698228080256