Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq28 89.7 5e-13 >seq28 Length=1197646 Score = 89.7 bits (98), Expect = 5e-13 Identities = 118/161 (73%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 20240 CCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACT 20299 || || |||||||||| ||| | || | | ||||| || || ||||| ||||| || Sbjct 525696 CCTGTGACATGAGCAATCATGCATGTCAGCAAAGAATAACTAGCTATGTTGAAAGGGACA 525637 Query 20300 CCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACA 20359 ||||||||||| || | || || ||||||| ||||| || || || |||| ||||| Sbjct 525636 CCCAAACCCATATCAGCAGATCTTTGATACATTTGACAAGACAGTTCGCCGTTTGCTACG 525577 Query 20360 TAAAATTGA-CATAACAAGTGACAGGGCGGAAGCGCCATCA 20399 || || ||| | ||||| || || ||||| | ||||||| Sbjct 525576 TAGAACTGAGCCAAACAA-TGGCACGGCGGCAATGCCATCA 525537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441344188008240