Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq4370 102 6e-17 seq3436 102 6e-17 seq3094 102 6e-17 seq3016 102 6e-17 seq736 102 6e-17 seq667 102 6e-17 seq221 102 6e-17 seq1331 100 2e-16 seq25 84.2 2e-11 >seq4370 Length=1150 Score = 102 bits (112), Expect = 6e-17 Identities = 82/94 (87%), Gaps = 5/94 (5%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTA--ACTGAGTAAGATCTAAGGAA 114389 |||||||| |||||||||||||||| |||||||||||| | |||| ||||||||||| Sbjct 983 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGATGGAGTG-GATCTAAGGAA 1041 Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCG 114423 ||| ||||||| |||||||||||||| ||| ||| Sbjct 1042 CCATAACTGATTTATTGAGCCATTCGCGGTTTCG 1075 Score = 102 bits (112), Expect = 6e-17 Identities = 82/94 (87%), Gaps = 5/94 (5%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTA--ACTGAGTAAGATCTAAGGAA 115586 |||||||| |||||||||||||||| |||||||||||| | |||| ||||||||||| Sbjct 983 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGATGGAGTG-GATCTAAGGAA 1041 Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCG 115620 ||| ||||||| |||||||||||||| ||| ||| Sbjct 1042 CCATAACTGATTTATTGAGCCATTCGCGGTTTCG 1075 >seq3436 Length=1649 Score = 102 bits (112), Expect = 6e-17 Identities = 82/94 (87%), Gaps = 5/94 (5%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTA--ACTGAGTAAGATCTAAGGAA 115586 |||||||| |||||||||||||||| |||||||||||| | |||| ||||||||||| Sbjct 335 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGATGGAGTG-GATCTAAGGAA 277 Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCG 115620 ||| ||||||| |||||||||||||| ||| ||| Sbjct 276 CCATAACTGATTTATTGAGCCATTCGCGGTTTCG 243 Score = 102 bits (112), Expect = 6e-17 Identities = 82/94 (87%), Gaps = 5/94 (5%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTA--ACTGAGTAAGATCTAAGGAA 114389 |||||||| |||||||||||||||| |||||||||||| | |||| ||||||||||| Sbjct 335 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGATGGAGTG-GATCTAAGGAA 277 Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCG 114423 ||| ||||||| |||||||||||||| ||| ||| Sbjct 276 CCATAACTGATTTATTGAGCCATTCGCGGTTTCG 243 >seq3094 Length=35191 Score = 102 bits (112), Expect = 6e-17 Identities = 82/94 (87%), Gaps = 5/94 (5%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTA--ACTGAGTAAGATCTAAGGAA 115586 |||||||| |||||||||||||||| |||||||||||| | |||| ||||||||||| Sbjct 34276 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGATGGAGTG-GATCTAAGGAA 34218 Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCG 115620 ||| ||||||| |||||||||||||| ||| ||| Sbjct 34217 CCATAACTGATTTATTGAGCCATTCGCGGTTTCG 34184 Score = 102 bits (112), Expect = 6e-17 Identities = 82/94 (87%), Gaps = 5/94 (5%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTA--ACTGAGTAAGATCTAAGGAA 114389 |||||||| |||||||||||||||| |||||||||||| | |||| ||||||||||| Sbjct 34276 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGATGGAGTG-GATCTAAGGAA 34218 Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCG 114423 ||| ||||||| |||||||||||||| ||| ||| Sbjct 34217 CCATAACTGATTTATTGAGCCATTCGCGGTTTCG 34184 >seq3016 Length=3219 Score = 102 bits (112), Expect = 6e-17 Identities = 82/94 (87%), Gaps = 5/94 (5%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTA--ACTGAGTAAGATCTAAGGAA 114389 |||||||| |||||||||||||||| |||||||||||| | |||| ||||||||||| Sbjct 2549 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGATGGAGTG-GATCTAAGGAA 2607 Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCG 114423 ||| ||||||| |||||||||||||| ||| ||| Sbjct 2608 CCATAACTGATTTATTGAGCCATTCGCGGTTTCG 2641 Score = 102 bits (112), Expect = 6e-17 Identities = 82/94 (87%), Gaps = 5/94 (5%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTA--ACTGAGTAAGATCTAAGGAA 115586 |||||||| |||||||||||||||| |||||||||||| | |||| ||||||||||| Sbjct 2549 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGATGGAGTG-GATCTAAGGAA 2607 Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCG 115620 ||| ||||||| |||||||||||||| ||| ||| Sbjct 2608 CCATAACTGATTTATTGAGCCATTCGCGGTTTCG 2641 >seq736 Length=65969 Score = 102 bits (112), Expect = 6e-17 Identities = 82/94 (87%), Gaps = 5/94 (5%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTA--ACTGAGTAAGATCTAAGGAA 114389 |||||||| |||||||||||||||| |||||||||||| | |||| ||||||||||| Sbjct 596 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGATGGAGTG-GATCTAAGGAA 654 Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCG 114423 ||| ||||||| |||||||||||||| ||| ||| Sbjct 655 CCATAACTGATTTATTGAGCCATTCGCGGTTTCG 688 Score = 102 bits (112), Expect = 6e-17 Identities = 82/94 (87%), Gaps = 5/94 (5%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTA--ACTGAGTAAGATCTAAGGAA 115586 |||||||| |||||||||||||||| |||||||||||| | |||| ||||||||||| Sbjct 596 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGATGGAGTG-GATCTAAGGAA 654 Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCG 115620 ||| ||||||| |||||||||||||| ||| ||| Sbjct 655 CCATAACTGATTTATTGAGCCATTCGCGGTTTCG 688 >seq667 Length=64734 Score = 102 bits (112), Expect = 6e-17 Identities = 82/94 (87%), Gaps = 5/94 (5%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTA--ACTGAGTAAGATCTAAGGAA 115586 |||||||| |||||||||||||||| |||||||||||| | |||| ||||||||||| Sbjct 840 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGATGGAGTG-GATCTAAGGAA 782 Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCG 115620 ||| ||||||| |||||||||||||| ||| ||| Sbjct 781 CCATAACTGATTTATTGAGCCATTCGCGGTTTCG 748 Score = 102 bits (112), Expect = 6e-17 Identities = 82/94 (87%), Gaps = 5/94 (5%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTA--ACTGAGTAAGATCTAAGGAA 114389 |||||||| |||||||||||||||| |||||||||||| | |||| ||||||||||| Sbjct 840 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGATGGAGTG-GATCTAAGGAA 782 Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCG 114423 ||| ||||||| |||||||||||||| ||| ||| Sbjct 781 CCATAACTGATTTATTGAGCCATTCGCGGTTTCG 748 Score = 102 bits (112), Expect = 6e-17 Identities = 82/94 (87%), Gaps = 5/94 (5%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTA--ACTGAGTAAGATCTAAGGAA 115586 |||||||| |||||||||||||||| |||||||||||| | |||| ||||||||||| Sbjct 64669 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGATGGAGTG-GATCTAAGGAA 64611 Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCG 115620 ||| ||||||| |||||||||||||| ||| ||| Sbjct 64610 CCATAACTGATTTATTGAGCCATTCGCGGTTTCG 64577 Score = 102 bits (112), Expect = 6e-17 Identities = 82/94 (87%), Gaps = 5/94 (5%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTA--ACTGAGTAAGATCTAAGGAA 114389 |||||||| |||||||||||||||| |||||||||||| | |||| ||||||||||| Sbjct 64669 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGATGGAGTG-GATCTAAGGAA 64611 Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCG 114423 ||| ||||||| |||||||||||||| ||| ||| Sbjct 64610 CCATAACTGATTTATTGAGCCATTCGCGGTTTCG 64577 >seq221 Length=150313 Score = 102 bits (112), Expect = 6e-17 Identities = 82/94 (87%), Gaps = 5/94 (5%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTA--ACTGAGTAAGATCTAAGGAA 115586 |||||||| |||||||||||||||| |||||||||||| | |||| ||||||||||| Sbjct 10740 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGATGGAGTG-GATCTAAGGAA 10682 Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCG 115620 ||| ||||||| |||||||||||||| ||| ||| Sbjct 10681 CCATAACTGATTTATTGAGCCATTCGCGGTTTCG 10648 Score = 102 bits (112), Expect = 6e-17 Identities = 82/94 (87%), Gaps = 5/94 (5%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTA--ACTGAGTAAGATCTAAGGAA 114389 |||||||| |||||||||||||||| |||||||||||| | |||| ||||||||||| Sbjct 10740 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGATGGAGTG-GATCTAAGGAA 10682 Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCG 114423 ||| ||||||| |||||||||||||| ||| ||| Sbjct 10681 CCATAACTGATTTATTGAGCCATTCGCGGTTTCG 10648 >seq1331 Length=8854 Score = 100 bits (110), Expect = 2e-16 Identities = 81/93 (87%), Gaps = 4/93 (4%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAAC-TGAGTAAGATCTAAGGAAC 115587 |||||||| |||||||||||||||| |||||||||||| || || |||||||||||| Sbjct 7833 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGATGGGTG-GATCTAAGGAAC 7775 Query 115588 CAAAACTGATATATTGAGCCATTCGTGGTATCG 115620 || ||||||| |||||||||||||| ||| ||| Sbjct 7774 CATAACTGATTTATTGAGCCATTCGCGGTTTCG 7742 Score = 100 bits (110), Expect = 2e-16 Identities = 81/93 (87%), Gaps = 4/93 (4%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAAC-TGAGTAAGATCTAAGGAAC 114390 |||||||| |||||||||||||||| |||||||||||| || || |||||||||||| Sbjct 7833 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGATGGGTG-GATCTAAGGAAC 7775 Query 114391 CAAAACTGATATATTGAGCCATTCGTGGTATCG 114423 || ||||||| |||||||||||||| ||| ||| Sbjct 7774 CATAACTGATTTATTGAGCCATTCGCGGTTTCG 7742 >seq25 Length=1288025 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||||||||||| |||| |||| ||||| || ||||||||| ||||||||||||| Sbjct 1058409 ACCTCCTCTCAAACGCAAGACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCTGA 1058350 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 ||| || | || |||| || || |||||||| || || ||||||||||| Sbjct 1058349 CAAGGTACGACCATCTTCCAGCTGTTTACCGGCAAAGATGAGACGCTGCTGATC 1058296 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||||||||||| ||||| |||| || || || |||||| || ||||||||||||| Sbjct 1059986 ACCTCCTCTCAAACGCAGAACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCTGA 1059927 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 |||| || | || |||| || || |||||||| || || ||||||||||| Sbjct 1059926 CAATGTACGACCATCTTCCAGCTGTTTACCGGCAAAGATGAGACGCTGCTGATC 1059873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397037303919172