Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq25 125 2e-23 seq11 116 9e-21 seq110 84.2 5e-11 >seq25 Length=1288025 Score = 125 bits (138), Expect = 2e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | ||| || | ||||| ||| || || || || || || || | Sbjct 1060213 CCACCGCGAAGACGAAGGACCAAATGAAGAGTGGACTCCTTCTGAATGTTGTAATCCGAA 1060154 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || ||||| ||||| | ||| ||||| || || || |||||||| || | ||| Sbjct 1060153 AGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGCTGCTGGTCAGGAGGG 1060094 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| || || ||||| || ||||| ||||| || || | || || || ||| Sbjct 1060093 ATTCCTTCCTTGTCTTGGATCTTAGCTTTGACGTTCTCAATGGTGTCTGACGGCTCAACT 1060034 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| || || || |||| ||||| ||||| |||||||| Sbjct 1060033 TCGAGGGTGATGGTTTTTCCTGTCAAGGTCTTCACGAAAATCTGCAT 1059987 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 |||||||| || |||||||| || || ||||| || || | ||| | ||| ||||| Sbjct 1058513 CCTTCTTTGTCTTGGATTTTAGCCTTGACGTTCTCAATCGTGTCGGAAGGTTCAACTTCA 1058454 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| || || |||||||||||||| |||||||| Sbjct 1058453 AGGGTGATGGTCTTTCCAGTGAGAGTCTTGACGAAGATCTGCAT 1058410 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||||||||| || ||||||||||| ||||| || || | ||| | ||| ||| Sbjct 1059305 ATACCTTCTTTATCTTGAATTTTCGCTTTAACGTTCTCGATGGTGTCGGATGGTTCAACT 1059246 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||| || ||||| ||||| || || |||||||| Sbjct 1059245 TCAAGAGTAATGGTCTTTCCAGTCAGGGTCTTCACAAAGATCTGCAT 1059199 >seq11 Length=2187803 Score = 116 bits (128), Expect = 9e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343 |||| || || || ||||| | || || ||||| ||||| | |||||| || || |||| Sbjct 911322 CTTTCTGAATGTTGTAGTCAGATAGAGTACGTCCATCTTCAAGTTGTTTGCCAGCAAAGA 911263 Query 288344 TCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTT 288403 ||| ||||| || | ||||| ||||| || || |||||||| || || || |||| Sbjct 911262 TCAATCGCTGCTGGTCAGGAGGGATACCTTCCTTGTCTTGGATTTTTGCCTTGACATTTT 911203 Query 288404 CTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463 | || | || | || || || || ||||| ||||| || ||||| |||||||||| Sbjct 911202 CGATGGTGTCTGAAGGCTCGACCTCAAGGGTGATGGTCTTACCCGTCAGGGTCTTGACGA 911143 Query 288464 ATATCTGCATTATG 288477 | ||||||||| || Sbjct 911142 AGATCTGCATTTTG 911129 >seq110 Length=421644 Score = 84.2 bits (92), Expect = 5e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 72416 CCAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATAC 72475 |||||| ||| |||||||| | ||||||||||| |||||| ||||||||| ||||| || Sbjct 51089 CCAAGCTTCTACGTCAGAGCTTTATGGAAAAGTTCAAGAAGTTCCTCAGAATGAAAAAAC 51148 Query 72476 TCCGTTTTATCCTCGA 72491 || ||||||||| || Sbjct 51149 CCCTTTTTATCCTAGA 51164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179576017126108