Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq25 122 9e-23 seq11 96.9 3e-15 >seq25 Length=1288025 Score = 122 bits (134), Expect = 9e-23 Identities = 168/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | | ||| || | ||||| || || || || |||||||||||||| | Sbjct 1060214 ACCACCGCGAAGACGAAGGACCAAATGAAGAGTGGACTCCTTCTGAATGTTGTAATCCGA 1060155 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | |||||||| ||||| || ||| |||| || ||||||||||| ||||| Sbjct 1060154 AAGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGCTGCTGGTCAGGAGG 1060095 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATC-ACCGGCGTCC 64393 |||||||| || ||||| | | || ||||| || ||| | || || |||| || Sbjct 1060094 GATTCCTTCCTTGTCTTGGA-TCTTAGCTTTGACGTTCTCAATGGTGTCTGACGGC-TCA 1060037 Query 64394 ACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| | || | ||| || || ||||| || || |||||||| ||||| Sbjct 1060036 ACTTCGAGGGTGATGGTTTTTCCTGTCAAGGTCTTCACGAAAATCTGCAT 1059987 Score = 86.0 bits (94), Expect = 6e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| ||||| || ||||| ||||||||||| | | ||| || | || || |||||| Sbjct 1058783 TGAAGAGTCGACTCCTTTTGGATGTTGTAATCGGACAAGGTACGACCATCCTCGAGCTGC 1058724 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCT 64342 || |||||| | ||||| |||||||||||||| || || ||| Sbjct 1058723 TTTCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGGATACCT 1058682 >seq11 Length=2187803 Score = 96.9 bits (106), Expect = 3e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 64254 CTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAA 64313 |||| ||||||||||| || | | || || | |||||||| || ||||| ||| | | Sbjct 911322 CTTTCTGAATGTTGTAGTCAGATAGAGTACGTCCATCTTCAAGTTGTTTGCCAGCAAAGA 911263 Query 64314 TGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCT 64373 | | ||||||||||| ||||| || ||||| || ||||| |||||| ||| ||| | Sbjct 911262 TCAATCGCTGCTGGTCAGGAGGGATACCTTCCTTGTCTTGGATTTTTGCCTTGACATTTT 911203 Query 64374 CCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGA 64433 | | || || | || || || | || | |||||| || |||| || || |||| Sbjct 911202 CGATGGTGTCTGAAGGCTCGACCTCAAGGGTGATGGTCTTACCCGTCAGGGTCTTGACGA 911143 Query 64434 AAATTTGCATTTT 64446 | || |||||||| Sbjct 911142 AGATCTGCATTTT 911130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499612410525840