Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq11 102 8e-17 seq25 98.7 1e-15 >seq11 Length=2187803 Score = 102 bits (112), Expect = 8e-17 Identities = 138/191 (72%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 138425 CCTTT-TGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAG 138483 ||||| |||||||||||||| | |||||| || || |||||||| || | | || Sbjct 911323 CCTTTCTGAATGTTGTAGTCAGATAGAGTACGTCCATCTTCAAGTTGTTTGCCAGCAAAG 911264 Query 138484 ATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGT 138543 || | ||||| ||||| ||||| |||||||| ||||| ||||||| || | | | Sbjct 911263 ATCAATCGCTGCTGGTCAGGAGGGATACCTTCCTTGTCTTGGATTTTTGCCTTGACATTT 911204 Query 138544 TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603 || | |||||| | | ||| ||||| | || | || ||||| ||||| || || || Sbjct 911203 TCGATGGTGTCTGAAGGCTCGACCTCAAGGGTGATGGTCTTACCCGTCAGGGTCTTGACG 911144 Query 138604 AAAATCTGCAT 138614 || |||||||| Sbjct 911143 AAGATCTGCAT 911133 >seq25 Length=1288025 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || ||||| | | |||||||| ||||||||||| || Sbjct 1060213 CCACCGCGAAGACGAAGGACCAAATGAAGAGTGGACTCCTTCTGAATGTTGTAATCCGAA 1060154 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| || || ||||| || || | | | || |||||||| ||||| ||||| Sbjct 1060153 AGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGCTGCTGGTCAGGAGGG 1060094 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| || ||| | | || | |||||| | || ||| || Sbjct 1060093 ATTCCTTCCTTGTCTTGGATCTTAGCTTTGACGTTCTCAATGGTGTCTGACGGCTCAACT 1060034 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | ||||| || |||| || || || ||||||||||| Sbjct 1060033 TCGAGGGTGATGGTTTTTCCTGTCAAGGTCTTCACGAAAATCTGCAT 1059987 Score = 89.7 bits (98), Expect = 5e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || ||||| || || ||||||| |||||||||| ||||||||||||||| Sbjct 1057237 GCCTCCGCGTAAACGTAATACCAAATGTAATGTTGACTCCTTCTGAATGTTGTAGTCGGA 1057178 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || |||||| ||||| | |||||| |||| |||| ||||| || || || || || Sbjct 1057177 CAGAGTACGACCATCCTCCAATTGTTTGCCGGCGAAGATGAGACGTTGCTGATCGGGTGG 1057118 Query 138507 TATACCT 138513 || ||| Sbjct 1057117 GATGCCT 1057111 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| |||||||| ||| || || | | ||||||||||| |||||||| || | Sbjct 1059985 CCTCCTCTCAAACGCAGAACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCTGAC 1059926 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || || |||||||||| | |||| |||||||| || || || || Sbjct 1059925 AATGTACGACCATCTTCCAGCTGTTTACCGGCAAAGATGAGACGCTGCTGATCAGGTGGG 1059866 Query 138508 ATACCT 138513 |||||| Sbjct 1059865 ATACCT 1059860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496230229789920