Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq25 93.3 3e-14 seq11 82.4 5e-11 >seq25 Length=1288025 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTT 15025 ||||| || |||||||| || || || ||||| ||||| || || || | |||| Sbjct 1056810 ACTAAGTGCAGGGTAGATTCCTTCTGGATGTTATAATCA--GACAAGGTACGACCATCTT 1056753 Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085 | | ||||||||||| | ||||||||||| || || |||||| || ||||| || Sbjct 1056752 CCAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGATCTGGTGGAATGCCCTCCTTATCTT 1056693 Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 ||| ||| || ||| | || |||||||| | || || || | ||| ||||| | Sbjct 1056692 GAATCTTGGCCTTAACATTCTCGATAGTATCAGAAGGCTCAACCTCAAGGGTGATGGTCT 1056633 Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 | || |||| || || ||||| || ||||| || Sbjct 1056632 TGCCAGTCAATGTCTTGACAAAGATCTGCATCTT 1056599 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || |||||||| || || || || || ||||||||||| ||| | | | ||||| Sbjct 1060195 ACCAAATGAAGAGTGGACTCCTTCTGAATGTTGTAATCCGAAAGAGTACGTCCATCTTCA 1060136 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||| || ||||| | || | |||||| ||||| || |||||||||||||| Sbjct 1060135 AGTTGCTTTCCAGCAAAAATAAGACGCTGCTGGTCAGGAGGGATTCCTTCCTTGTCTTGG 1060076 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || ||| || | || || || || || || || | ||| |||||||| Sbjct 1060075 ATCTTAGCTTTGACGTTCTCAATGGTGTCTGACGGCTCAACTTCGAGGGTGATGGTTTTT 1060016 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||||| || || || ||||| |||||| Sbjct 1060015 CCTGTCAAGGTCTTCACGAAAATCTGCATA 1059986 >seq11 Length=2187803 Score = 82.4 bits (90), Expect = 5e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 14987 CTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATA 15046 |||| || |||||||| || ||| | | | ||||| | |||||||||||| | | Sbjct 911322 CTTTCTGAATGTTGTAGTCAGATAGAGTACGTCCATCTTCAAGTTGTTTGCCAGCAAAGA 911263 Query 15047 TCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTT 15106 |||| ||||| ||||| || || ||||||||||| ||||| || ||| ||| Sbjct 911262 TCAATCGCTGCTGGTCAGGAGGGATACCTTCCTTGTCTTGGATTTTTGCCTTGACATTTT 911203 Query 15107 CTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAA 15166 | || || || | || || || | ||| ||||| ||||| ||||| || || || | Sbjct 911202 CGATGGTGTCTGAAGGCTCGACCTCAAGGGTGATGGTCTTACCCGTCAGGGTCTTGACGA 911143 Query 15167 AAATTTGCATATT 15179 | || ||||| || Sbjct 911142 AGATCTGCATTTT 911130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357369411262010