Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq11 109 5e-19 seq25 100 3e-16 >seq11 Length=2187803 Score = 109 bits (120), Expect = 5e-19 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 126924 CTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGA 126983 |||| ||||| ||||| || | || || ||| || || ||||| ||||| ||| Sbjct 911322 CTTTCTGAATGTTGTAGTCAGATAGAGTACGTCCATCTTCAAGTTGTTTGCCAGCAAAGA 911263 Query 126984 TCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTT 127043 ||||||||||||| || ||||| || || |||||||| |||||| ||||| | || Sbjct 911262 TCAATCGCTGCTGGTCAGGAGGGATACCTTCCTTGTCTTGGATTTTTGCCTTGACATTTT 911203 Query 127044 CGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 127103 ||| |||||| | | |||||| || | ||| | || || || ||||| || || || | Sbjct 911202 CGATGGTGTCTGAAGGCTCGACCTCAAGGGTGATGGTCTTACCCGTCAGGGTCTTGACGA 911143 Query 127104 AAATCTGCAT 127113 | |||||||| Sbjct 911142 AGATCTGCAT 911133 >seq25 Length=1288025 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | ||| ||||| ||||| || | ||||||||||| || || ||||||||| | Sbjct 1059588 CCACCTCTTAAACGCAAGACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCGGAC 1059529 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| || ||||| || |||||| | || || ||||||||||||||||| Sbjct 1059528 AGAGTACGACCATCTTCCAGCTGCTTACCAGCGAAAATTAAACGCTGCTGATCGGGAGGA 1059469 Query 127007 ATGCC 127011 || || Sbjct 1059468 ATACC 1059464 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | |||||||| | || ||||| || ||||| |||||||| Sbjct 1060213 CCACCGCGAAGACGAAGGACCAAATGAAGAGTGGACTCCTTCTGAATGTTGTAATCCGAA 1060154 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || || || |||||||| | || | |||||||| || ||||| Sbjct 1060153 AGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGCTGCTGGTCAGGAGGG 1060094 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || |||||||| ||| || |||| | || | |||||| | ||| ||| Sbjct 1060093 ATTCCTTCCTTGTCTTGGATCTTAGCTTTGACGTTCTCAATGGTGTCTGACGGCTCAACT 1060034 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | ||||| || |||| || || || ||||||||||| Sbjct 1060033 TCGAGGGTGATGGTTTTTCCTGTCAAGGTCTTCACGAAAATCTGCAT 1059987 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||| || || || || || ||||| || || ||| ||| || |||||||| ||| Sbjct 1056798 GTAGATTCCTTCTGGATGTTATAATCAGACAAGGTACGACCATCTTCCAGCTGTTTGCCA 1056739 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || ||||||| ||||||||||| || || ||||||||||| || || || ||| Sbjct 1056738 GCAAAGATCAAACGCTGCTGATCTGGTGGAATGCCCTCCTTATCTTGAATCTTGGCCTTA 1056679 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| || || | | ||| || || | ||| | || ||||| |||| || Sbjct 1056678 ACATTCTCGATAGTATCAGAAGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAATGTC 1056619 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 1056618 TTGACAAAGATCTGCAT 1056602 Score = 86.0 bits (94), Expect = 6e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || |||||||| || || |||||||||| || ||||| || ||||| ||||| ||| | Sbjct 1057236 CCTCCGCGTAAACGTAATACCAAATGTAATGTTGACTCCTTCTGAATGTTGTAGTCGGAC 1057177 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| ||| || | ||||| || ||| |||| | || ||||||||||| || Sbjct 1057176 AGAGTACGACCATCCTCCAATTGTTTGCCGGCGAAGATGAGACGTTGCTGATCGGGTGGG 1057117 Query 127007 ATGCC 127011 ||||| Sbjct 1057116 ATGCC 1057112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475469975660640