Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq25 93.3 4e-14 seq18 87.8 2e-12 >seq25 Length=1288025 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | || | | |||| ||||| || |||||||| ||||| |||||||| Sbjct 1056831 ATTCCTCCTCTCAGACGGAGGACTAAGTGCAGGGTAGATTCCTTCTGGATGTTATAATCA 1056772 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| |||| ||||| || || | ||||| || ||||| || || Sbjct 1056771 GACAAGGTACGACCATCTTCCAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGATCTGGT 1056712 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 |||||||| || ||||||||||| || || | || | || || |||| ||| Sbjct 1056711 GGAATGCCCTCCTTATCTTGAATCTTGGCCTTAACATTCTCGATAGTATCAGAAGGCTCA 1056652 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || || | || ||||| || | || || ||||| || |||||| Sbjct 1056651 ACCTCAAGGGTGATGGTCTTGCCAGTCAATGTCTTGACAAAGATCTGCATC 1056601 >seq18 Length=1446981 Score = 87.8 bits (96), Expect = 2e-12 Identities = 122/169 (72%), Gaps = 4/169 (2%) Strand=Plus/Plus Query 123303 GCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAAC 123362 || ||||| | ||||| ||||| |||||||| ||||||| | |||| || | || Sbjct 597480 GCAATCTACTTGGAACCTTGGCATTCTGATGTGTTCGATTTTCTCGATTTGAA--GAAAA 597537 Query 123363 ATGGGGGCG--GAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATT 123420 || ||| |||||||| || || ||||| || |||||| | ||| | |||||| Sbjct 597538 ATACCGGCAAAGAAGAAAATCGTGCGCGTGATTTATTTTACGCTCTCTGGATTCCCGATC 597597 Query 123421 TGTTTATGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCC 123469 ||||||||||||| || || || |||| ||||| || |||||||| Sbjct 597598 TGTTTATGCGACGTGTTGAATCTGATGGCGATTGGTCACTGATGTGTCC 597646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451973898892560