Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq5 104 4e-17 >seq5 Length=2511979 Score = 104 bits (114), Expect = 4e-17 Identities = 234/348 (67%), Gaps = 8/348 (2%) Strand=Plus/Plus Query 159911 TTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTG 159970 || |||| || |||||| || || |||| ||||| || | ||||| | || || Sbjct 2471906 TTGAACATGACGCACGCGAAATCAGTATGCAAACCCTCATCTCTTGAGATCAGTTCATTT 2471965 Query 159971 GACATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCA 160030 || | | | | ||| ||||| | || ||| ||| |||||||| || || ||||| | Sbjct 2471966 GAGAAGGTCAAGCCAGGCATCAAACCTCGCTTTTTAAGCCAAAAGATAGCTGCAAAGGAC 2472025 Query 160031 CCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCG 160090 || || || || || ||||| || ||||| || |||| || |||| ||| || Sbjct 2472026 CCAGAGAAGAAAATTCCTTCCACTGCGGCAAAAGCAACGATTCTTTCACTGTAAGGTGCA 2472085 Query 160091 T---TGGTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATG 160147 | | || || ||||| | | ||||||||||| ||||| |||||||| ||||| Sbjct 2472086 TCTTTATTGCCAA---TCCACTTCATTGCCCATTCAGCTTTCTTAGCGATGCAAGGCATT 2472142 Query 160148 CGCTCGACGGCGTTAAACAATC-TGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAAT 160206 ||| || || || || | | |||||| ||| ||||||||| ||| |||| Sbjct 2472143 GTCTCTACAGCATTGAAAAGCCTTGTCCT-CTCAGCGGAATCCTTGATATAAGTTTCAAT 2472201 Query 160207 CAGCTTCGAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAA 160254 ||| ||||||||| | ||| | |||||| ||||| || || || Sbjct 2472202 GAGCAGGCTGTACATTTCAGAGTGGATATTTTCCATGGCAATTTGGAA 2472249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795103654064160