Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq25 111 4e-19 seq11 98.7 2e-15 seq30 91.5 3e-13 >seq25 Length=1288025 Score = 111 bits (122), Expect = 4e-19 Identities = 85/101 (84%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| ||||||||||||||||||| |||||| || | ||| || | ||||| Sbjct 1058792 AGAACCAAGTGAAGAGTCGACTCCTTTTGGATGTTGTAATCGGACAAGGTACGACCATCC 1058733 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 || |||||||||||||| |||||||||||||||||||| || Sbjct 1058732 TCGAGCTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGG 1058692 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| | || ||||| |||||||| || | |||||| || | | ||| Sbjct 1060207 CGAAGACGAAGGACCAAATGAAGAGTGGACTCCTTCTGAATGTTGTAATCCGAAAGAGTA 1060148 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||||||| || |||||||| || || || |||||||||||||| ||| |||||| Sbjct 1060147 CGTCCATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGCTGCTGGTCAGGAGGGATTCCT 1060088 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| || ||| || | |||||||| | || || || | Sbjct 1060087 TCCTTGTCTTGGATCTTAGCTTTGACGTTCTCAATGGTGTCTGACGGCTCAACTTCGAGG 1060028 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || | || ||||| ||||| || Sbjct 1060027 GTGATGGTTTTTCCTGTCAAGGTCTTCACGAAAATCTG 1059990 Score = 107 bits (118), Expect = 5e-18 Identities = 85/102 (83%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || | ||||||||| ||||||||||||| |||||| || | ||| || | ||||| Sbjct 1059971 CAGAACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCTGACAATGTACGACCATC 1059912 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 ||||||||| || ||||| ||||||||||||||||| || || Sbjct 1059911 TTCCAGCTGTTTACCGGCAAAGATGAGACGCTGCTGATCAGG 1059870 Score = 105 bits (116), Expect = 2e-17 Identities = 84/101 (83%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| ||||||||||| ||||||| |||||| |||| |||||| | |||||| Sbjct 1057612 AGAACCAAGTGAAGAGTCGACTCTTTTTGGATGTTGTAATCAGACAAAGTACGGCCATCT 1057553 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 || ||||||||||| ||||| || ||||||||||| || || Sbjct 1057552 TCGAGCTGCTTTCCAGCGAAAATTAGACGCTGCTGATCGGG 1057512 Score = 95.1 bits (104), Expect = 3e-14 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 || |||||||| || |||||||||||||||||| | || ||| | ||||||||| ||||| Sbjct 1057909 CTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACCTTGTCGGATTACAACATCCAG 1057968 Query 200995 AAAGAGTCTACTCTTCACCTTGTTTTG 201021 || |||||||| |||||| | || ||| Sbjct 1057969 AAGGAGTCTACCCTTCACTTGGTCTTG 1057995 Score = 95.1 bits (104), Expect = 3e-14 Identities = 82/102 (80%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 || ||| | ||| || || |||||||| |||| |||||| || | ||| || | ||||| Sbjct 1058394 CAAGACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCTGACAAGGTACGACCATC 1058335 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 ||||||||| || ||||| ||||||||||||||||| || || Sbjct 1058334 TTCCAGCTGTTTACCGGCAAAGATGAGACGCTGCTGATCAGG 1058293 Score = 93.3 bits (102), Expect = 1e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | |||||| || ||||||||||| | ||||||||| | | ||| | |||||| Sbjct 1059182 AGAACCAAGTGGAGGGTTGACTCCTTTTGAATGTTGTAGTCGGATAGAGTACGACCATCT 1059123 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 |||| |||||| || ||||| || ||||||||||| || ||| ||| ||| Sbjct 1059122 TCCAACTGCTTACCAGCGAAAATCAGACGCTGCTGATCGGGAGGAATACCT 1059072 Score = 93.3 bits (102), Expect = 1e-13 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 || ||||| || |||||| |||||||||| | ||| || ||||||||||| |||||||| Sbjct 1059491 ATTTTCGCTGGTAAGCAGCTGGAAGATGGTCGTACTCTGTCCGATTACAACATCCAGAAA 1059550 Query 200998 GAGTCTACTCTTCACCTTGTTTTG 201021 ||||||||||||||| | || ||| Sbjct 1059551 GAGTCTACTCTTCACTTGGTCTTG 1059574 Score = 89.7 bits (98), Expect = 1e-12 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| || || || ||||| |||| ||| || |||| ||| || | |||||| Sbjct 1056813 AGGACTAAGTGCAGGGTAGATTCCTTCTGGATGTTATAATCAGACAAGGTACGACCATCT 1056754 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||||||| || || || ||||| | ||||||||| || || ||| || || || Sbjct 1056753 TCCAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGATCTGGTGGAATGCCCTCCTTATCT 1056694 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| || |||| || || | | || || || | ||||| ||| Sbjct 1056693 TGAATCTTGGCCTTAACATTCTCGATAGTATCAGAAGGCTCAACCTCAAGGGTGATGGTC 1056634 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || || ||||| || || Sbjct 1056633 TTGCCAGTCAATGTCTTGACAAAGATCTG 1056605 Score = 89.7 bits (98), Expect = 1e-12 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 || ||| | ||| || || |||||||| |||| |||||| || | ||| || | |||||| Sbjct 1057995 CAAGACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCCGACAAGGTACGTCCATC 1057936 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 ||||| |||||| || |||||||| || || |||||||| || Sbjct 1057935 TTCCAACTGCTTACCAGCGAAGATCAGGCGTTGCTGGTCTGG 1057894 Score = 89.7 bits (98), Expect = 1e-12 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 || ||| | ||| ||||| ||||| || |||| |||||| || | || ||| | ||||| Sbjct 1059574 CAAGACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCGGACAGAGTACGACCATC 1059515 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 |||||||||||| || ||||| || | ||||||||| || ||| ||| ||| Sbjct 1059514 TTCCAGCTGCTTACCAGCGAAAATTAAACGCTGCTGATCGGGAGGAATACCT 1059463 >seq11 Length=2187803 Score = 98.7 bits (108), Expect = 2e-15 Identities = 145/202 (72%), Gaps = 5/202 (2%) Strand=Plus/Minus Query 199440 CCTTT-TGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAG 199498 ||||| || | ||||||||||| | ||| | ||||||||| || || || || || ||| Sbjct 911323 CCTTTCTGAATGTTGTAGTCAGATAGAGTACGTCCATCTTCAAGTTGTTTGCCAGCAAAG 911264 Query 199499 ATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGAT 199558 || | ||||||||||| ||| || ||||| || || || ||| ||| || | Sbjct 911263 ATCAATCGCTGCTGGTCAGGAGGGATACCTTCCTTGTCTTGGATTTTTGCCTTGACATTT 911204 Query 199559 TCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACA 199618 |||| |||||||| | || || || | ||||| ||||||||||| || || || || Sbjct 911203 TCGATGGTGTCTGAAGGCTCGACCTCAAGGGTGATGGTCTTACCCGTCAGGGTCTTGACG 911144 Query 199619 AAAATTTGGTACATTTTAGCCT 199640 || || || |||||| |||| Sbjct 911143 AAGATCTG---CATTTT-GCCT 911126 >seq30 Length=1199123 Score = 91.5 bits (100), Expect = 3e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||| | || || ||||| |||| ||||||||| | |||||| Sbjct 428870 CGAAGGCGGAGCACCAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAAGTG 428929 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||||||||||||||| ||||||||||| | | |||||| || ||| ||| ||| Sbjct 428930 CGACCATCTTCCAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGATCAGGAGGAATACCT 428989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178843265817462