Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq11 93.3 5e-14 seq25 91.5 2e-13 seq30 84.2 2e-11 >seq11 Length=2187803 Score = 93.3 bits (102), Expect = 5e-14 Identities = 139/196 (71%), Gaps = 1/196 (1%) Strand=Plus/Minus Query 46404 CCTTT-TGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| || || |||||||| |||||||| || | || || || || ||||| || || Sbjct 911323 CCTTTCTGAATGTTGTAGTCAGATAGAGTACGTCCATCTTCAAGTTGTTTGCCAGCAAAG 911264 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| ||||||||||| | || | | |||||||| ||| || ||||| | Sbjct 911263 ATCAATCGCTGCTGGTCAGGAGGGATACCTTCCTTGTCTTGGATTTTTGCCTTGACATTT 911204 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| | || || || | |||||||| || |||||||| || || || Sbjct 911203 TCGATGGTGTCTGAAGGCTCGACCTCAAGGGTGATGGTCTTACCCGTCAGGGTCTTGACG 911144 Query 46583 AAGATTTGCATTTTGC 46598 ||||| |||||||||| Sbjct 911143 AAGATCTGCATTTTGC 911128 >seq25 Length=1288025 Score = 91.5 bits (100), Expect = 2e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || |||||||||||||| |||| || | ||| ||| || ||||| ||||| ||||| Sbjct 1059588 CCACCTCTTAAACGCAAGACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCGGAC 1059529 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGG 46481 ||||| || | || || |||||||| || ||||| || || |||||||| |||| Sbjct 1059528 AGAGTACGACCATCTTCCAGCTGCTTACCAGCGAAAATTAAACGCTGCTGATCGG 1059474 Score = 86.0 bits (94), Expect = 7e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | |||||| || |||| ||| ||||| |||||| || || |||||||||| Sbjct 1057238 TGCCTCCGCGTAAACGTAATACCAAATGTAATGTTGACTCCTTCTGAATGTTGTAGTCGG 1057179 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGG 46481 | ||||| || | || || | || ||||||||||| || | || ||||| |||| Sbjct 1057178 ACAGAGTACGACCATCCTCCAATTGTTTGCCGGCGAAGATGAGACGTTGCTGATCGG 1057122 >seq30 Length=1199123 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||| ||||| || ||||| ||||| ||||||||||| | |||||| | || || Sbjct 428881 CACCAAGTGCAAGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGACCATCTTC 428940 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 ||||||||||||||||| ||||| | |||||| || Sbjct 428941 CAGCTGCTTGCCGGCGAAGATCAACCTCTGCTGATC 428976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565201758420720