Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq85 181 4e-40 seq96 168 3e-36 seq25 127 8e-24 seq11 107 8e-18 seq3 93.3 2e-13 >seq85 Length=551187 Score = 181 bits (200), Expect = 4e-40 Identities = 385/565 (68%), Gaps = 21/565 (4%) Strand=Plus/Minus Query 450895 AATGTCTGTCAAAAAAGTAGCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGG 450954 |||| ||| ||| | ||| ||||||||||| | || || || | |||||||| | Sbjct 185645 AATGGCTGCCAAGACTCCAGCTGTTGGAATTGATTTGGGTACAACTTACTCATGTGTTG- 185587 Query 450955 TGTTTACCAAAATGGAAATGTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCC 451014 ||| | ||| |||| || |||||||| || || ||||| || ||| || || || || Sbjct 185586 TGTGTTCCAGCATGGTAAAGTAGAAATCATTGCCAATGATCAGGGAAATCGCACCACACC 185527 Query 451015 TTCATGGGTAAGTTTTACGGATTCAGAAAGACTTTTAGGGCAAGCTGCTAA--ATCAATG 451072 || | ||| ||||| || | ||| | | | || | | ||| || ||||| Sbjct 185526 CTCTTATGTAGCATTTACTGACACTGAACGTTTAATTGGTGATGTTGCAAAGAATCAAGT 185467 Query 451073 GTAAATTCAAATGCCAAAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTAT 451132 ||| ||| ||| |||||||| | |||||| || ||||| ||||| || | | Sbjct 185466 TGCAATG--AATCCCACCAACACAGTTTTTGATGCCAAGCGTTTGATTGGTCGGCGATTT 185409 Query 451133 GATGATGATACTGTA---CAAAAAGAGA--AAAAATT--CTTTTCTTATGATGTAGTAAA 451185 || || |||||| || || | ||| ||| | ||| || ||||| | Sbjct 185408 GAGGAC---ACTGTAGTCCAGGCTGATATGAAACATTGGCCATTC----GAAGTAGTCAG 185356 Query 451186 TCAAAAAGGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCC 451245 | | |||||| || | |||||||| | || || |||||| || || || || Sbjct 185355 TGATGGAGGAAAACCAAAGATTCAAGTTGACTACAAGAATGAAACAAAGACATTCTTCCC 185296 Query 451246 TGAAGAAATTTCATCTATGGTTCTTACTAAA-ATGAAAGAAACAGCAGAACAATATATTG 451304 |||||||||||| |||||||| || || || ||||| || || || ||| || | | Sbjct 185295 TGAAGAAATTTCTTCTATGGTG-TTGCTCAAGATGAAGGAGACTGCTGAAGCTTACCTAG 185237 Query 451305 GTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGC 451364 | | |||| | |||| ||| ||||||| || || ||||| ||||| |||| || | Sbjct 185236 GCAAGACTGTTAGTAATGCTGTAGTTACTGTACCTGCATATTTTAATGACTCACAGCGTC 185177 Query 451365 AAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAAC 451424 |||| ||||||||||| ||| ||||||||| | |||||||||| ||||| ||||||| Sbjct 185176 AAGCCACTAAAGATGCTGGAACAATTGCTGGTCTCAATGTTCTTCACATTATCAATGAAC 185117 Query 451425 CTACAGCAGCTGCTCTAGCATATGG 451449 | ||||| ||||| | || ||||| Sbjct 185116 CCACAGCTGCTGCAATTGCTTATGG 185092 >seq96 Length=444560 Score = 168 bits (186), Expect = 3e-36 Identities = 364/534 (68%), Gaps = 8/534 (1%) Strand=Plus/Plus Query 450920 GGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTAGAA 450979 ||||||||| | ||||| || | |||||||| ||||| | ||| |||| || || ||| Sbjct 118381 GGAATTGATTTGGGAACAACTTACTCATGTGTTGGTGTATTCCAGCATGGTAAGGTTGAA 118440 Query 450980 ATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACGGATTCA 451039 || || || ||||| || || || || |||||||| | || ||| | ||| | Sbjct 118441 ATCATTGCCAATGATCAGGGTAATCGTACCACTCCTTCCTATGTGGCATTTTCCGATACT 118500 Query 451040 GAAAGACTTTTAGGGCAAGCTGCTAA-ATCAATGGTAAATTCAAATGCCAAAAACACAGT 451098 ||| | || | || | |||||||| | | | | | | || ||| |||||||| Sbjct 118501 GAACGTCTCATTGGTGATGCTGCTAAGAACCAAGTTGCCATGAACC-CCACCAACACAGT 118559 Query 451099 ATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACT-GTACAAAAAGAGA 451157 | |||||| || | || ||||| |||| || ||| || | | | || || || | Sbjct 118560 TTTTGATGCCAAGAGATTGATTGGACGTAGGTTTGAGGAC-ACAGTAGTCCAGGCTGATA 118618 Query 451158 AAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTCAAGTAAATT 451217 ||| | | | ||| || | | | | ||| ||||| | || ||||| | | Sbjct 118619 TGAAACATTGGCCATTTGAAGTTATCAGTGATGGAGGCAAGCCAAAGATCCAAGTTGAGT 118678 Query 451218 ATAAAGGTGAAACTAAAA-CTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAA 451276 | || |||||| |||| ||| | | || ||||| || || || |||||| || || || Sbjct 118679 ACAAGAATGAAACGAAAAACTTCTTC-CCAGAAGAGATCTCTTCCATGGTT-TTGCTCAA 118736 Query 451277 -ATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGT 451335 ||||| ||||| || ||| || | || ||||| | |||| || ||||||| Sbjct 118737 GATGAAGGAAACTGCTGAAGCTTACCTAGGCAAGACAGTTGCCAATGCTGTTGTTACTGT 118796 Query 451336 TCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGG 451395 || |||||||||||||| | || || ||||| || |||||||| ||| ||||||||| Sbjct 118797 CCCTGCTTATTTCAATGACTCCCAGCGTCAAGCCACCAAAGATGCTGGAACTATTGCTGG 118856 Query 451396 TTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGG 451449 | | ||||||||||| || || || |||||||| || ||||| | || ||||| Sbjct 118857 TCTCAATGTTCTTCGTATCATCAACGAACCTACTGCTGCTGCAATTGCTTATGG 118910 >seq25 Length=1288025 Score = 127 bits (140), Expect = 8e-24 Identities = 168/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || ||| ||||||| || || || || ||||| ||||| | ||| Sbjct 1056602 ATGCAGATCTTTGTCAAGACATTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCTTCT 1056661 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || || | |||| || |||||||||||||| || ||||| || ||||| Sbjct 1056662 GATACTATCGAGAATGTTAAGGCCAAGATTCAAGATAAGGAGGGCATTCCACCAGATCAG 1056721 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||||| || || | || ||||| || |||||||| | || ||| | |||||||| Sbjct 1056722 CAGCGTTTGATCTTTGCTGGCAAACAGCTGGAAGATGGTCGTACCTTGTCTGATTATAAC 1056781 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGATAAATACA 391282 || | ||||| | || || |||||||| | | ||||||||| ||| || Sbjct 1056782 ATCCAGAAGGAATCTACCCTGCACTTAGTCCTCCGTCTGAGAGGAGGAATGCA 1056834 Score = 120 bits (132), Expect = 1e-21 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || |||| || ||||| || || || || ||||| | || Sbjct 1059987 ATGCAGATTTTCGTGAAGACCTTGACAGGAAAAACCATCACCCTCGAAGTTGAGCCGTCA 1060046 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | ||| || || ||||| ||||||||||| |||||||| || Sbjct 1060047 GACACCATTGAGAACGTCAAAGCTAAGATCCAAGACAAGGAAGGAATCCCTCCTGACCAG 1060106 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | ||||| | || || ||||||||||||||| | ||| | ||||||| || Sbjct 1060107 CAGCGTCTTATTTTTGCTGGAAAGCAACTTGAAGATGGACGTACTCTTTCGGATTACAAC 1060166 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | ||||| | || ||||| || || Sbjct 1060167 ATTCAGAAGGAGTCCACTCTTCATTTGGT 1060195 >seq11 Length=2187803 Score = 107 bits (118), Expect = 8e-18 Identities = 134/184 (73%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || ||||| || || ||||| ||||| || || || ||||| || || | || Sbjct 911132 AATGCAGATCTTCGTCAAGACCCTGACGGGTAAGACCATCACCCTTGAGGTCGAGCCTTC 911191 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | ||| ||| | | || |||||| ||||| |||||||| || |||||||| || Sbjct 911192 AGACACCATCGAAAATGTCAAGGCAAAAATCCAAGACAAGGAAGGTATCCCTCCTGACCA 911251 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || || || || || | || |||||||||||||||||| | ||| | | || || || Sbjct 911252 GCAGCGATTGATCTTTGCTGGCAAACAACTTGAAGATGGACGTACTCTATCTGACTACAA 911311 Query 391229 TATT 391232 ||| Sbjct 911312 CATT 911315 >seq3 Length=3777634 Score = 93.3 bits (102), Expect = 2e-13 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 451238 TTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAA 451297 |||||||| || |||||||| |||||||| | ||||||||| || || ||| Sbjct 2188054 TTTGCTCCAGAGGAAATTTCTGCTATGGTTTTGGGTAAAATGAAGGAGGTTGCCGAAGCT 2188113 Query 451298 TATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCA 451357 || ||||| ||| || | || || | ||||| || ||||||||||| ||||| Sbjct 2188114 TACCTTGGTAAGAAAGTCACCCACGCTGTCGTCACTGTCCCTGCTTATTTCAACGATGCC 2188173 Query 451358 CAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGT 451396 || || ||||| ||||||||||| ||| ||||||||| Sbjct 2188174 CAGCGTCAAGCCACTAAAGATGCTGGAGTCATTGCTGGT 2188212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975587122156088