Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq5 96.9 4e-15 >seq5 Length=2511979 Score = 96.9 bits (106), Expect = 4e-15 Identities = 139/191 (73%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 117291 ACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTT 117350 ||||||||||| || || ||||||||||||||| | ||| ||||| | ||| ||||| Sbjct 2471938 ACCCTCATCTCTTGAGATCAGTTCATTTGAGAAGGTCAAGCCAGGCATCAAACCTCGCTT 2471997 Query 117351 CTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAA 117409 || | |||| | ||||| ||| || ||||| |||||||| || || ||||| |||| Sbjct 2471998 TTTAAGCCAAAAGATAGCTGCA-AAGGACCCAGAGAAGAAAATTCCTTCCACTGCGGCAA 2472056 Query 117410 ACGCAAAAAGGCGCTCGGCG-AAGGAGCGAGACTTTGTGTCAAACCATTTCATTGCCCAT 117468 | |||| | | || | |||| || | || || ||| ||| |||||||||||| Sbjct 2472057 AAGCAACGATTCTTTCACTGTAAGGTGC-ATCTTTATTGCCAATCCACTTCATTGCCCAT 2472115 Query 117469 TTCGCCTTCTT 117479 | || ||||| Sbjct 2472116 TCAGCTTTCTT 2472126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589942554494640