Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq25 168 1e-36 >seq25 Length=1288025 Score = 168 bits (186), Expect = 1e-36 Identities = 159/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 |||||||||||||| || ||||| |||||||| | |||||| | |||||||| || ||| Sbjct 1060189 TGAAGAGTGGACTCCTTCTGAATGTTGTAATCCGAAAGAGTACGTCCATCTTCAAGTTGC 1060130 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || || ||||| || || ||||| ||||| || ||||| |||||||| || || Sbjct 1060129 TTTCCAGCAAAAATAAGACGCTGCTGGTCAGGAGGGATTCCTTCCTTGTCTTGGATCTTA 1060070 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 |||||||||||||||||||| || || ||||| ||||| | || ||||||||| Sbjct 1060069 GCTTTGACGTTCTCAATGGTGTCTGACGGCTCAACTTCGAGGGTGATGGTTTTTCCTGTC 1060010 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 || || || ||||| | ||||| Sbjct 1060009 AAGGTCTTCACGAAAATCTGCAT 1059987 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 195037 CCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCA 195096 |||||||||||||| ||||| ||||||||||||||| ||||| ||| ||| |||||| Sbjct 1058513 CCTTCTTTGTCTTGGATTTTAGCCTTGACGTTCTCAATCGTGTCGGAAGGTTCAACTTCA 1058454 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | |||||||| || | ||| || ||||| | ||||| Sbjct 1058453 AGGGTGATGGTCTTTCCAGTGAGAGTCTTGACGAAGATCTGCAT 1058410 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 195037 CCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCA 195096 |||||||||||||| || || |||||||||||||||||||||||| ||| ||||| Sbjct 1058912 CCTTCTTTGTCTTGGATCTTAGCCTTGACGTTCTCAATGGTGTCCGATGGTTCGACTTCG 1058853 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| |||||||| ||||| || || ||||| | ||||| Sbjct 1058852 AGCGTAATAGTCTTTCCAGTCAAGGTCTTGACGAAAATCTGCAT 1058809 Score = 98.7 bits (108), Expect = 2e-15 Identities = 89/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || | ||||||||| |||||||| || || |||||||||| ||||| | ||||| Sbjct 1059574 CAAGACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCGGACAGAGTACGACCATC 1059515 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 ||| ||||||||||| ||||| || | || || || || |||||||| ||| Sbjct 1059514 TTCCAGCTGCTTACCAGCGAAAATTAAACGCTGCTGATCGGGAGGAATACCT 1059463 Score = 93.3 bits (102), Expect = 9e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||||||||| ||||||||||| || |||||||| | | ||| | |||||||| Sbjct 1057610 AACCAAGTGAAGAGTCGACTCTTTTTGGATGTTGTAATCAGACAAAGTACGGCCATCTTC 1057551 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 ||||||||| || ||||| || || || || || || || ||||| ||| Sbjct 1057550 GAGCTGCTTTCCAGCGAAAATTAGACGCTGCTGATCGGGCGGAATACCT 1057502 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 195037 CCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCA 195096 |||||||||||||||||||| |||||| || ||||| ||||| ||| || |||||| Sbjct 1057732 CCTTCTTTGTCTTGAATTTTAGCCTTGACATTTTCAATTGTGTCAGAAGGCTCAACTTCA 1057673 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||||| || |||||||| || ||||| | ||||| Sbjct 1057672 AGAGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAAATCTGCAT 1057629 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 195037 CCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCA 195096 |||||||||||||||||||| ||| ||||||||||| || ||||| || |||||| Sbjct 1058114 CCTTCTTTGTCTTGAATTTTGGCCTTAACGTTCTCAATTGTATCCGATGGCTCAACTTCA 1058055 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | |||||||| || | ||| || ||||| | ||||| Sbjct 1058054 AGGGTGATGGTCTTTCCGGTAAGAGTCTTCACGAAAATCTGCAT 1058011 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 195037 CCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCA 195096 |||||||||||||||||||| ||| || |||||||| || ||||| ||||||||| Sbjct 1059693 CCTTCTTTGTCTTGAATTTTGGCCTTAACATTCTCAATTGTATCCGATGGCTCCACTTCA 1059634 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | |||||||| || | ||| || ||||| | ||||| Sbjct 1059633 AGGGTGATGGTCTTTCCGGTAAGAGTCTTCACGAAAATCTGCAT 1059590 Score = 87.8 bits (96), Expect = 4e-12 Identities = 87/110 (79%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTT 194989 ||| | ||||||||| ||||| ||||| || |||||||||| |||| || | ||||| | Sbjct 1058790 AACCAAGTGAAGAGTCGACTCCTTTTGGATGTTGTAATCGGACAAG-GTACGACCATCCT 1058732 Query 194990 CGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 |||||||||| || || ||||| || || || ||||| || || || ||| Sbjct 1058731 CGAGCTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGTGGGATACCT 1058682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109407879801662