Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq5 206 3e-48 seq18 102 9e-17 >seq5 Length=2511979 Score = 206 bits (228), Expect = 3e-48 Identities = 273/379 (72%), Gaps = 0/379 (0%) Strand=Plus/Plus Query 18946 TGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCA 19005 ||||| ||||| | || || |||||| ||| | ||||| ||||| |||| |||| Sbjct 2471903 TGTTTGAACATGACGCACGCGAAATCAGTATGCAAACCCTCATCTCTTGAGATCAGTTCA 2471962 Query 19006 TTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAAT 19065 || || || || || |||||||||| |||| ||||| | ||| || |||| ||||| Sbjct 2471963 TTTGAGAAGGTCAAGCCAGGCATCAAACCTCGCTTTTTAAGCCAAAAGATAGCTGCAAAG 2472022 Query 19066 GATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTA 19125 || ||||| ||||| || ||||| ||||| ||||||||||| | |||||| | ||| Sbjct 2472023 GACCCAGAGAAGAAAATTCCTTCCACTGCGGCAAAAGCAACGATTCTTTCACTGTAAGGT 2472082 Query 19126 GCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATT 19185 ||||| ||||| |||||| |||| |||||| ||||| ||||| | || |||||| Sbjct 2472083 GCATCTTTATTGCCAATCCACTTCATTGCCCATTCAGCTTTCTTAGCGATGCAAGGCATT 2472142 Query 19186 GTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATC 19245 ||||||| || ||| || || | | |||| | | ||| || | ||| | || || Sbjct 2472143 GTCTCTACAGCATTGAAAAGCCTTGTCCTCTCAGCGGAATCCTTGATATAAGTTTCAATG 2472202 Query 19246 AATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACAT 19305 | | ||||||||||| || || |||||||| || || || || || || || ||||| Sbjct 2472203 AGCAGGCTGTACATTTCAGAGTGGATATTTTCCATGGCAATTTGGAAACCATAGAAACAG 2472262 Query 19306 CTTGCTTCTGTTATCTGTA 19324 | ||||| | | ||||| Sbjct 2472263 CGAGCTTCAGGAACCTGTA 2472281 Score = 93.3 bits (102), Expect = 5e-14 Identities = 85/106 (80%), Gaps = 1/106 (1%) Strand=Plus/Plus Query 19441 TTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTA 19500 || ||| |||| || | ||| ||||||||| | |||||||||||||| ||||||||||| Sbjct 2472520 TTGATACCTTT-GAAAGATCAACTTCTTCAGCAGTCCAAAAAGAAGCTTCTGCTTTTTTG 2472578 Query 19501 TACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATC 19546 ||||| | ||| |||||| | || || || || |||| ||||||| Sbjct 2472579 TACATTTGCCAGATATCATGGTACTGGATGGGGAATAGCACAAATC 2472624 >seq18 Length=1446981 Score = 102 bits (112), Expect = 9e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 48354 TTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACA 48413 ||||| || ||||| |||| ||| | || || ||||| || || | | ||||||||| Sbjct 597389 TTATTTCCACCTTGGTCTACATAACGAGCTGTGTTGTTGTACACGCGAAGCATTGGGACT 597330 Query 48414 ATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTAT--ATTAC 48471 | ||| || || || ||||| ||||| | ||||||||||| |||| | || | | Sbjct 597329 AGACCGTTGGAAATTCCATTTGTTCCTGCGATATAACTTCCTGTAGCGCGAATGCAGTGG 597270 Query 48472 TAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTAT 48531 ||| | ||| |||||||| || ||| || || | ||||| | || | || | Sbjct 597269 ACGTTG--AGACCAATACCACCAGCAGATTTGGAGATAATGGCACATTGCTTCAAAGTTT 597212 Query 48532 CATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACT 48580 |||||||||| || ||||| |||||| |||| | | ||||| ||||| Sbjct 597211 CATAAATTCCATCAATACTGTCATCTTTCATGGTAAGAAGAAAGCAACT 597163 Score = 95.1 bits (104), Expect = 1e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 48153 AACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTC 48212 || || || ||||||| ||||||||||| ||||||||| ||||| || || | | Sbjct 597664 AATCCTGGGCATTCATGAGGACACATCAGTGACCAATCGCCATCAGATTCAACACGTCGC 597605 Query 48213 ATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTG 48272 ||||| | ||| || ||||| ||||| ||||||||| | | | |||||| ||| Sbjct 597604 ATAAACAGATCGGGAATCCAGAGAGCGTAAAATAAATCACGCGCACGATTTTCTTCTTTG 597545 Query 48273 CCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATAT 48332 || |||| | || | || ||||| || | | ||||| |||||| ||||| || || Sbjct 597544 CCGGTATTTTTCTTCAAATCGAGAAAATCGAACACATCAGAATGCCAAGGTTCCAAGTAG 597485 Query 48333 ATTGC 48337 ||||| Sbjct 597484 ATTGC 597480 Score = 82.4 bits (90), Expect = 9e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 || |||||||| || | || || ||| ||| |||||| || |||| ||| || ||| Sbjct 598782 TGGAATTCTCCCGACAAAACCCTGCGGACATAAATATTAGAAGTGTATGCTTCAATCGAT 598723 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAA 47440 ||||||||||| | |||||| ||||| || ||||| ||||| | ||| | ||| Sbjct 598722 TCATTATTTCCCAGAATTTGCGCAGTCGAAGCTGTGGGCATAGGTGCCAATAA 598670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562072361297040