Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq85 316 2e-80 seq96 286 3e-71 seq19 208 6e-48 seq25 116 3e-20 seq11 91.5 1e-12 >seq85 Length=551187 Score = 316 bits (350), Expect = 2e-80 Identities = 408/552 (74%), Gaps = 11/552 (2%) Strand=Plus/Minus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 |||| | || || ||||| || || || || ||||||| ||| | || ||||||| Sbjct 185627 AGCTGTTGGAATTGATTTGGGTACAACTTACTCATGTGTTG-TGTGTTCCAGCATGGTAA 185569 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 ||| ||||| |||||||||||||| || || | || || || |||||||| | || || Sbjct 185568 AGTAGAAATCATTGCCAATGATCAGGGAAATCGCACCACACCCTCTTATGTAGCATTTAC 185509 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGC--CACTGGTAATCCTACC 550168 || ||||||| |||| ||||||||| ||||| |||||| || || ||||| ||| Sbjct 185508 TGACACTGAACGTTTAATTGGTGATGTTGCAAAGAATCAAGTTGCAATG--AATCCCACC 185451 Query 550169 AATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAG 550228 || || |||||||||| || ||||| ||||| | | ||| | || | || ||| Sbjct 185450 AACACAGTTTTTGATGCCAAGCGTTTGATTGGTCGGCGATTTGAGGACACTGTAGTCCAG 185391 Query 550229 GCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAA 550288 || |||||||| |||||||| ||| || | || | || | |||||||| | ||| || Sbjct 185390 GCTGATATGAAACATTGGCCATTCGAAGTAGTCAGTGATGGAGGAAAACCAAAGATTCAA 185331 Query 550289 GCT-ACT-CATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTT 550346 | | ||| || ||| || | ||| | ||| || ||| ||||||| |||||||| | Sbjct 185330 GTTGACTACAAGAATGAAACAA-AGACATTCTTC-CCTGAAGAAATTTCTTCTATGGTGT 185273 Query 550347 TAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAA-GTTACGGATGCAGTA 550405 | | || ||||| | || || |||| | || ||||| |||| |||| ||| Sbjct 185272 TGCTCAAGATGAAGGAGACTGCTGAAGCTTACCTAGG-CAAGACTGTTAGTAATGCTGTA 185214 Query 550406 ATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGT 550465 | |||||||| |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct 185213 GTTACTGTACCTGCATATTTTAATGACTCACAGCGTCAAGCCACTAAAGATGCTGGAACA 185154 Query 550466 ATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATAT 550525 |||||||| || |||||||||| |||||||||||||| || ||||||||| |||| ||| Sbjct 185153 ATTGCTGGTCTCAATGTTCTTCACATTATCAATGAACCCACAGCTGCTGCAATTGCTTAT 185094 Query 550526 GGACTTGATAAA 550537 || | |||||| Sbjct 185093 GGTTTAGATAAA 185082 Score = 116 bits (128), Expect = 3e-20 Identities = 99/122 (81%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 361705 ACCATAAGCTAATGAAGCAGCTGTTGGTTCGTTAATTATTTTAATAACATTGAGTCCCGC 361764 ||||||||| | || ||||||||| ||||| || || || | || ||||||||| || || Sbjct 185091 ACCATAAGCAATTGCAGCAGCTGTGGGTTCATTGATAATGTGAAGAACATTGAGACCAGC 185150 Query 361765 TATTTTTGATGCATCTAAAGTGGCTTGACGTTGTGCATCATTAAAATATGCAGGAACAGT 361824 ||| || |||||| |||||||||||| |||| ||||||||||||||||| ||||| Sbjct 185151 AATTGTTCCAGCATCTTTAGTGGCTTGACGCTGTGAGTCATTAAAATATGCAGGTACAGT 185210 Query 361825 AA 361826 || Sbjct 185211 AA 185212 Score = 87.8 bits (96), Expect = 1e-11 Identities = 126/176 (72%), Gaps = 4/176 (2%) Strand=Plus/Minus Query 552087 GATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGA 552146 ||| | || || |||||| || || | || || ||||| || || |||||||| || | Sbjct 184567 GATGCCAAAATGGATAAAACCCAAATTCAGGATATTGTTCTCGTCGGTGGATCGACTCGT 184508 Query 552147 ATTCCTAAAATTCGCGAAATGTT--AAGTTCTTATTTCAATGGTAAAAAATTAAATGAAA 552204 ||||||||| | | || | || ||| | | ||||| || || || | || | Sbjct 184507 ATTCCTAAAGTCCAAAAATTATTGCAAGATTTC--TTCAACGGGAAGGAACTCAACAAGT 184450 Query 552205 GTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTT 552260 | ||||||| |||||||||||||| |||||||| || ||||||| ||||| ||| Sbjct 184449 CTATTAATCCCGATGAGGCTGTTGCTTATGGTGCTGCCGTTCAAGCTGCTATCCTT 184394 >seq96 Length=444560 Score = 286 bits (316), Expect = 3e-71 Identities = 401/552 (73%), Gaps = 12/552 (2%) Strand=Plus/Plus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 ||| |||| || ||||| ||||| || || ||||||||||| | || ||||||| Sbjct 118375 GCTGTAGGAATTGATTTGGGAACAACTTACTCATGTGTTGGTGTATTCCAGCATGGTAAG 118434 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 |||||||| |||||||||||||| ||||| | || ||||| || ||||| | || | Sbjct 118435 GTTGAAATCATTGCCAATGATCAGGGTAATCGTACCACTCCTTCCTATGTGGCATTTTCC 118494 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG---CCACTGGTAATCCTACC 550168 || ||||||| | | |||||||||| || || | |||| ||| || || || ||| Sbjct 118495 GATACTGAACGTCTCATTGGTGATGCTGCTAAGAACCAAGTTGCCA-TG--AACCCCACC 118551 Query 550169 AATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAG 550228 || || |||||||||| || | || |||||| | || ||| | || | || ||| Sbjct 118552 AACACAGTTTTTGATGCCAAGAGATTGATTGGACGTAGGTTTGAGGACACAGTAGTCCAG 118611 Query 550229 GCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAA 550288 || |||||||| |||||||| || || || | | || | || || || | || || Sbjct 118612 GCTGATATGAAACATTGGCCATTTGAAGTTATCAGTGATGGAGGCAAGCCAAAGATCCAA 118671 Query 550289 GCT-ACT-CATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTT 550346 | | | | || ||| || | |||| | ||| |||||| | || || || ||||||| Sbjct 118672 GTTGAGTACAAGAATGAAACGAAAAACT-TCTTC-CCAGAAGAGATCTCTTCCATGGTTT 118729 Query 550347 TAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGA-AGTTACGGATGCAGTA 550405 | | || ||||| |||| || |||| | || ||||| |||| | |||| || Sbjct 118730 TGCTCAAGATGAAGGAAACTGCTGAAGCTTACCTAGG-CAAGACAGTTGCCAATGCTGTT 118788 Query 550406 ATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGT 550465 | ||||| || || ||||| |||||||| || |||||||| || |||||||||||| | Sbjct 118789 GTTACTGTCCCTGCTTATTTCAATGACTCCCAGCGTCAAGCCACCAAAGATGCTGGAACT 118848 Query 550466 ATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATAT 550525 |||||||| || |||||||||||||| ||||| |||||||||||||||||| |||| ||| Sbjct 118849 ATTGCTGGTCTCAATGTTCTTCGTATCATCAACGAACCTACTGCTGCTGCAATTGCTTAT 118908 Query 550526 GGACTTGATAAA 550537 || | |||||| Sbjct 118909 GGTTTAGATAAA 118920 Score = 104 bits (114), Expect = 2e-16 Identities = 129/171 (75%), Gaps = 8/171 (5%) Strand=Plus/Plus Query 552093 AAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCT 552152 ||||| || ||| || || | || || ||||| || ||||||||||| || | ||||| Sbjct 119450 AAGATGGACAAAGCCCAAATTCAAGACATTGTTCTCGTTGGTGGATCAACCCGTATTCCG 119509 Query 552153 AAAATTCGCGAAA--TGTT--AAGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGT 552208 ||| | || ||| |||| ||| ||| |||||| || || | | || || | | Sbjct 119510 AAAGT--GCAAAAGCTGTTGCAAGA-CTT-TTTCAACGGCAAGGAGCTGAACAAATCTAT 119565 Query 552209 TAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCT 552259 ||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct 119566 CAATCCCGATGAGGCTGTTGCCTATGGTGCCGCTGTTCAAGCAGCTATTCT 119616 Score = 93.3 bits (102), Expect = 3e-13 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 361705 ACCATAAGCTAATGAAGCAGCTGTTGGTTCGTTAATTATTTTAATAACATTGAGTCCCGC 361764 ||||||||| | || |||||| || |||||||| || || || ||||||||| || || Sbjct 118911 ACCATAAGCAATTGCAGCAGCAGTAGGTTCGTTGATGATACGAAGAACATTGAGACCAGC 118852 Query 361765 TATTTTTGATGCATCTAAAGTGGCTTGACGTTGTGCATCATTAAAATATGCAGGAACAGT 361824 || || |||||| ||||||||||| || | ||||| ||||| ||||| ||||| Sbjct 118851 AATAGTTCCAGCATCTTTGGTGGCTTGACGCTGGGAGTCATTGAAATAAGCAGGGACAGT 118792 Query 361825 AATCACTGCTTTTTCAACT 361843 || || || || ||||| Sbjct 118791 AACAACAGCATTGGCAACT 118773 >seq19 Length=1465945 Score = 208 bits (230), Expect = 6e-48 Identities = 529/803 (66%), Gaps = 4/803 (0%) Strand=Plus/Plus Query 551789 TGGAGATTCTCATCTTGGTGGCGAAGATTTTGATAATAGACTGGT--ATCATGGTGTGTT 551846 ||||||| ||||| | ||||| |||||||| || || || |||| | || | ||| Sbjct 688516 TGGAGATACTCATTTGGGTGGTGAAGATTTCGACAACCGAATGGTCAACCAC--TTTGTA 688573 Query 551847 GAAGATTTTAAACGAAAAAACAAAGTTGATCTATCTACATCTGCCAAAGCTCTTCGTCGT 551906 |||| || || |||||| |||| ||||| || | | | ||||||||||||| Sbjct 688574 CAAGAATTCAACCGAAAACACAAGAAGGATCTGTCATCCAATCCACGAGCTCTTCGTCGT 688633 Query 551907 CTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATT 551966 || | || |||||||| | ||||| ||| | ||||| ||| | || || | ||| Sbjct 688634 CTTCGCACAGCTTGCGAGCGTGCCAAGCGAACGCTTTCTTCTTCCAGCCAGGCCTCAATT 688693 Query 551967 GAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTT 552026 || | || || | |||||||| || || | | || ||| ||||||| ||| Sbjct 688694 GAGATCGACTCGCTCTTTGAGGGTATCGACTTCTACACCAGCATTACGAGGGCTCGTTTT 688753 Query 552027 GAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGA 552086 ||||| |||| | ||||| || | ||| | ||||| |||||| | | | || Sbjct 688754 GAAGAACTTTGCGCCGATCTTTTCCGCGGAACCTTGGAACCCGTAGAAAAGGCCCTTCGA 688813 Query 552087 GATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGA 552146 ||| | ||||| || || | || | || ||||| || || || || || || || | Sbjct 688814 GATGCCAAGATGGACAAGGCTCAAATTCACGAAATCGTTCTGGTCGGAGGTTCAACTCGT 688873 Query 552147 ATTCCTAAAATTCGCGAAATGTTAAGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGT 552206 ||||| || |||| | ||||| || ||||| || ||| | || || | | Sbjct 688874 ATTCCCAAGATTCAGAAGATGTTGCAGGATTTCTTCAACGGAAAAGAGTTGAACAAGTCT 688933 Query 552207 GTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGA 552266 | || || ||||| || || |||||||| || ||| | ||||| ||||| ||| ||| Sbjct 688934 ATCAACCCTGATGAAGCCGTCGCCTATGGCGCTGCAGTCCAAGCTGCTATCCTTCACGGA 688993 Query 552267 CAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGT 552326 | | ||| | ||| || | | || | || ||| ||||||||||| | || Sbjct 688994 GACAAGTCTGAGGCTGTTCAAGATCTGCTGCTGCTCGACGTTGCTCCTCTATCTTTGGGC 689053 Query 552327 TTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGT 552386 | ||||| | || ||| | ||||| || ||| | |||| || || ||||| Sbjct 689054 ATTGAAACTGCAGGCGGTGTGATGACATCCCTCATCAAGCGAAACACCACCATTCCGACA 689113 Query 552387 AAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATT 552446 || || ||| || || | || ||| | ||||||||| | | ||| || || | Sbjct 689114 AAGCAAACTCAGGTTTTCACCACCTATGCTGATAATCAACCCGGTGTGCTGATCCAGGTG 689173 Query 552447 TTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAA 552506 | ||||||||| || | || || || || |||| | || | || | || Sbjct 689174 TACGAAGGAGAACGAGCGATGACCAAGGACAACAATCTGTTGGGCAAATTCGAATTGACC 689233 Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566 || || ||||| || || || || || || || |||||||||||||||||||||||||| Sbjct 689234 GGAATCCCTCCCGCACCACGAGGTGTTCCCCAGATTGAAGTTACTTTCGATATCGATGCT 689293 Query 552567 AATGGAATTTTGAATGTGACTGC 552589 || || || ||||| |||||||| Sbjct 689294 AACGGCATCTTGAACGTGACTGC 689316 Score = 140 bits (154), Expect = 3e-27 Identities = 243/352 (69%), Gaps = 10/352 (3%) Strand=Plus/Plus Query 550181 GATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAG 550240 ||||| |||||||| || || | ||||| | ||| | |||||| || |||||| Sbjct 687982 GATGCCAAACGTTTGATCGGTCGTCGTTTTGAAGATGCCTGCGTTCAGAGCGACATGAAG 688041 Query 550241 CATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCTACTCATGAA 550300 |||||||||||| || | |||| | | ||||| || | || | | | | || Sbjct 688042 CATTGGCCTTTCAAAGTGGTTAGCGATGGAGGAAAGCCGAAAATCCAGGTTGAATAC-AA 688100 Query 550301 GGATCTGTTAAACAA-----TTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAA 550355 || | |||| | || ||||| ||| | | || |||||||| | |||| | Sbjct 688101 GG----GCGAAACCAAGACTTTCTCACCGGAAGAGGTCTCGTCTATGGTGCTTGTGAAGA 688156 Query 550356 TGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTAC 550415 |||| |||||||| |||| | |||| || | || |||||||| || || ||||| | Sbjct 688157 TGAAGGAAACAGCCGAGGCTTATCTTGGACAGAAGGTGACGGATGCTGTCATCACTGTTC 688216 Query 550416 CAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGAC 550475 | || || || || || || |||||||| || || |||||||||||| |||| | || Sbjct 688217 CTGCCTACTTCAACGATTCCCAACGTCAGGCAACAAAAGATGCTGGAACTATTTCAGGCT 688276 Query 550476 TTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 | ||||| ||||| || || || || || |||||||| || |||| ||||| Sbjct 688277 TGAATGTCCTTCGCATCATTAACGAGCCCACTGCTGCAGCTATTGCTTATGG 688328 Score = 104 bits (114), Expect = 2e-16 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 || ||||| ||| | || || || || ||||| || || | ||| |||||||||| Sbjct 687726 ATTGGTATTGATCTGGGTACTACCTACTCATGTGTAGGAGTATTCCAACATGGTAAAGTG 687785 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 || ||||| ||||| || || |||||| | || ||||||||||||||| | || || || Sbjct 687786 GAGATTATCGCCAACGACCAGGGTAACCGTACAACTCCATCTTATGTTGCCTTTACCGAC 687845 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCA 550149 || |||| ||| |||| ||||| || ||| |||| Sbjct 687846 ACCGAACGTTTGATTGGAGATGCTGCTAAAAATCA 687880 >seq25 Length=1288025 Score = 116 bits (128), Expect = 3e-20 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| || || | |||||| || || || ||| |||||||| | ||||| | | Sbjct 1060204 AGACGAAGGACCAAATGAAGAGTGGACTCCTTCTGAATGTTGTAATCCGAAAGAGTACGT 1060145 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 |||||||||||| ||||| ||||||||||| | ||||| |||||||| |||||||| Sbjct 1060144 CCATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGCTGCTGGTCAGGAGGGATTCCTTCC 1060085 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTA 563436 || ||||| || || ||| || |||||| || || | | | |||||| || Sbjct 1060084 TTGTCTTGGATCTTAGCTTTGACGTTCTCAATGGTGTCTGACGGCTCAACTTCGAGGGTG 1060025 Query 563437 ACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 | ||||| || || | || || |||||||| |||||| Sbjct 1060024 ATGGTTTTTCCTGTCAAGGTCTTCACGAAAATCTGCATA 1059986 >seq11 Length=2187803 Score = 91.5 bits (100), Expect = 1e-12 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 563292 AATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCT 563351 ||| ||||| |||| |||||| | | ||||||||||||||| || ||||| || | || Sbjct 911315 AATGTTGTAGTCAGATAGAGTACGTCCATCTTCAAGTTGTTTGCCAGCAAAGATCAATCG 911256 Query 563352 TTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391 ||||| |||||||| || ||||| || ||||| |||||| Sbjct 911255 CTGCTGGTCAGGAGGGATACCTTCCTTGTCTTGGATTTTT 911216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029021740931140