Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq5 170 2e-37 >seq5 Length=2511979 Score = 170 bits (188), Expect = 2e-37 Identities = 266/376 (71%), Gaps = 16/376 (4%) Strand=Plus/Plus Query 37163 TTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATT 37222 ||| |||| | || || |||||| ||| ||||| |||||||| |||| |||||| Sbjct 2471905 TTTGAACATGACGCACGCGAAATCAGTATGCAAACCCTCATCTCTTGAGATCAGTTCATT 2471964 Query 37223 AGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGA 37282 || ||||| || || ||||| ||||||| ||||||| |||||| || |||||||| || Sbjct 2471965 TGAGAAGGTCAAGCCAGGCATCAAACCTCGCTTTTTAAGCCAAAAGATAGCTGCAAAGGA 2472024 Query 37283 TCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGA 37342 ||||| |||||||| ||||| ||||| ||||| || || | | | || | ||| || Sbjct 2472025 CCCAGAGAAGAAAATTCCTTCCACTGCGGCAAAAGCAACGATTCTTTCACTGTAAGGTGC 2472084 Query 37343 ACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAA---- 37398 | | || |||||| || ||| ||| || || || ||| | || ||| Sbjct 2472085 ATCTTTATTGCCAATCCACTTCATTGCCCATTCAGCTTTC---TTAGCG-ATGCAAGGCA 2472140 Query 37399 TTGTTTCAATTGCTTTTAAGAGAAAGtttttttCT-TCACT---ATCTGTTATATAAGTA 37454 |||| || | || || || ||| || | || ||| ||| | |||||||| Sbjct 2472141 TTGTCTCTACAGCATTGAA----AAGCCTTGTCCTCTCAGCGGAATCCTTGATATAAGTT 2472196 Query 37455 TCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAA 37514 ||||| || | || |||||||||||||| |||||||| || || || || |||||||| Sbjct 2472197 TCAATGAGCAGGCTGTACATTTCAGAGTGGATATTTTCCATGGCAATTTGGAAACCATAG 2472256 Query 37515 AAACACCTAGCTTCAG 37530 ||||| | |||||||| Sbjct 2472257 AAACAGCGAGCTTCAG 2472272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592278403063440