Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq25 147 2e-30 seq90 113 4e-20 >seq25 Length=1288025 Score = 147 bits (162), Expect = 2e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||||||||| | ||| | ||||| || ||||||||||| || || || || ||||| | Sbjct 1056830 TTCCTCCTCTCAGACGGAGGACTAAGTGCAGGGTAGATTCCTTCTGGATGTTATAATCAG 1056771 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | || | |||| |||| || || || ||||| ||||||||||| ||||| || | Sbjct 1056770 ACAAGGTACGACCATCTTCCAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGATCTGGTG 1056711 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 ||||||| || ||||||||||| || || ||| | || | ||| ||||| | || | Sbjct 1056710 GAATGCCCTCCTTATCTTGAATCTTGGCCTTAACATTCTCGATAGTATCAGAAGGCTCAA 1056651 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | ||||| |||| || ||||| || || || || ||||| |||||||| Sbjct 1056650 CCTCAAGGGTGATGGTCTTGCCAGTCAATGTCTTGACAAAGATCTGCAT 1056602 Score = 105 bits (116), Expect = 5e-18 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||||||||| || || || ||||| ||||| ||||| || || |||||||||| Sbjct 1059588 CCACCTCTTAAACGCAAGACCAAGTGAAGAGTAGACTCTTTCTGGATGTTGTAATCGGAC 1059529 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | |||| |||| |||||||| || || || |||||||| |||||||| ||| Sbjct 1059528 AGAGTACGACCATCTTCCAGCTGCTTACCAGCGAAAATTAAACGCTGCTGATCGGGAGGA 1059469 Query 101363 ATGCCT 101368 || ||| Sbjct 1059468 ATACCT 1059463 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 101366 CCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCA 101425 |||||||| ||||||||||| || ||| |||| | |||||||| | || |||||| Sbjct 1057732 CCTTCTTTGTCTTGAATTTTAGCCTTGACATTTTCAATTGTGTCAGAAGGCTCAACTTCA 1057673 Query 101426 AGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||||| || ||||| || ||||| || || || |||||||| Sbjct 1057672 AGAGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAAATCTGCAT 1057629 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| ||||| || || || ||||||||||| || || || || |||||||| | Sbjct 1058009 CCTCCTCTCAAACGCAAGACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCCGAC 1057950 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| ||||| |||||||| || || |||| || || || || || ||| Sbjct 1057949 AAGGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAGGCGTTGCTGGTCTGGGGGA 1057890 Query 101363 ATGCCT 101368 || ||| Sbjct 1057889 ATACCT 1057884 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| ||||| || || || ||||||||||| || || || || |||||||| | Sbjct 1058408 CCTCCTCTCAAACGCAAGACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCTGAC 1058349 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| |||| || ||||| ||||| || | |||||| ||||| || || Sbjct 1058348 AAGGTACGACCATCTTCCAGCTGTTTACCGGCAAAGATGAGACGCTGCTGATCAGGTGGG 1058289 Query 101363 ATGCCT 101368 || ||| Sbjct 1058288 ATACCT 1058283 Score = 82.4 bits (90), Expect = 6e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| || ||||| || || |||||||| || |||||||| | | ||| | | | Sbjct 1057616 ACGGAGAACCAAGTGAAGAGTCGACTCTTTTTGGATGTTGTAATCAGACAAAGTACGGCC 1057557 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCT 101368 ||| || | ||||| || || || || | |||||| |||||||||||||| ||| Sbjct 1057556 ATCTTCGAGCTGCTTTCCAGCGAAAATTAGACGCTGCTGATCGGGCGGAATACCT 1057502 >seq90 Length=518052 Score = 113 bits (124), Expect = 4e-20 Identities = 164/228 (72%), Gaps = 8/228 (4%) Strand=Plus/Plus Query 13655 AATTTTCGTTTACAACCTTCAAAATTCATGTGTCGTATTTTACCATAGAT---TGGTCGC 13711 |||||||||| |||||||| | ||||| | || ||||| ||| ||| | || || Sbjct 405449 AATTTTCGTTGACAACCTTTGTAGTTCATATAGCGAATTTTCCCAAAGACATCTCGTTGC 405508 Query 13712 T-CCATCCAGGCACGATCGTGAGTTCCGCATATTGACCACATGCAACCGGCATAACCGTT 13770 | |||||| || | || || | || || || |||||||||||||| | |||||| | Sbjct 405509 TTCCATCC---CATG-TCATGGATACCACAGATGGACCACATGCAACCAACGTAACCGCT 405564 Query 13771 GGGATCGCGTCCATCCAAACTGTATTTGTCGTTGAAATATATGGCGTTGATTAAAGCCAC 13830 ||||| || ||||||||||||||| ||||| | |||||||||| | | | ||| | Sbjct 405565 CGGATCTCGGCCATCCAAACTGTATCGATCGTTCAGATATATGGCGATTCTCAGAGCTTC 405624 Query 13831 TGTAGGCGAAATAGACCATTCTAATAtttttttAGCCCAATATATTCT 13878 | |||| | |||||| | |||||||| |||||||| || || Sbjct 405625 TTCCGGCGTTTCTGTCCATTCCAGGATTTTTTTTGCCCAATACATCCT 405672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396253353471402