Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq25 93.3 3e-14 >seq25 Length=1288025 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || ||| ||| || ||||| |||||||| || ||| | || | || || Sbjct 1060195 ACCAAATGAAGAGTGGACTCCTTCTGAATGTTGTAATCCGAAAGAGTACGTCCATCTTCA 1060136 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||||| || ||||| || || ||||| || || | || | || |||||||| Sbjct 1060135 AGTTGCTTTCCAGCAAAAATAAGACGCTGCTGGTCAGGAGGGATTCCTTCCTTGTCTTGG 1060076 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| ||| || | | | ||||||| ||| || || | || || |||||| Sbjct 1060075 ATCTTAGCTTTGACGTTCTCAATGGTGTCTGACGGCTCAACTTCGAGGGTGATGGTTTTT 1060016 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || || ||||||||||| Sbjct 1060015 CCTGTCAAGGTCTTCACGAAAATCTGCAT 1059987 Score = 82.4 bits (90), Expect = 6e-11 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || ||| |||||||| ||||| || |||||| | ||| | || ||| Sbjct 1059179 ACCAAGTGGAGGGTTGACTCCTTTTGAATGTTGTAGTCGGATAGAGTACGACCATCTTCC 1059120 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAA 48660 ||||||||||| || || ||||| ||||| ||||| | |||| Sbjct 1059119 AACTGCTTACCAGCGAAAATCAGACGCTGCTGATCGGGAGGAA 1059077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380913523077078