Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq5 91.5 3e-13 >seq5 Length=2511979 Score = 91.5 bits (100), Expect = 3e-13 Identities = 228/345 (66%), Gaps = 6/345 (2%) Strand=Plus/Plus Query 48130 GCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAG 48189 ||| || || || | ||||| || || || | ||| || | || |||||| | Sbjct 2471917 GCACGCGAAATCAGTATGCAAACCCTCATCTCTTGAGATCAGTTCATTTGAGAAGGTCAA 2471976 Query 48190 ACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAA 48249 |||||||| | || | || ||| ||||| || || || || || || ||||||||||| Sbjct 2471977 GCCAGGCATCAAACCTCGCTTTTTAAGCCAAAAGATAGCTGCAAAGGACCCAGAGAAGAA 2472036 Query 48250 GATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGA 48309 || || |||||||| || || || || || || | | ||| || | || | Sbjct 2472037 AATTCCTTCCACTGCGGCAAAAGCAACGATTCTTTCACTGTAAGGTGCATCTTTATTGCC 2472096 Query 48310 GATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCG 48369 ||||| | ||||| || || ||||| |||||| ||||| ||||||| || Sbjct 2472097 AATCCACTTCATTGCCCATTCAGCTTTCTTAGCGATGCAAGGCATTGTCTCTACAGCATT 2472156 Query 48370 GAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTA 48426 ||| ||| | | | |||| | | ||| | ||| || | ||||||| | ||| Sbjct 2472157 GAAAAGCCTTGTCCTCTCAGCGGAATCCTTGATATAAGTTTCAATGAGCAGGCT---GTA 2472213 Query 48427 CATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAA 48471 ||| |||||||| | ||| || || || || ||||| || ||||| Sbjct 2472214 CATTTCAGAGTGGATATTTTCCATGGCAATTTGGAAACCATAGAA 2472258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931472413386240