Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq85 324 9e-83 seq96 302 3e-76 seq19 176 3e-38 seq25 136 3e-26 seq11 96.9 2e-14 >seq85 Length=551187 Score = 324 bits (358), Expect = 9e-83 Identities = 408/550 (74%), Gaps = 13/550 (2%) Strand=Plus/Minus Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392 |||| |||||||| || || |||||| ||||| | ||| | || |||||||||||| Sbjct 185622 TTGGAATTGATTTGGGTACAACTTACTCATGTGTTG-TGTGTTCCAGCATGGTAAAGTAG 185564 Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452 |||| ||||||||||| || || ||| | || ||||| || ||||| | |||||||| | Sbjct 185563 AAATCATTGCCAATGATCAGGGAAATCGCACCACACCCTCTTATGTAGCATTTACTGACA 185504 Query 474453 CTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTA 474512 |||||| | | ||||| |||| ||| || |||||| |||| ||||| || || Sbjct 185503 CTGAACGTTTAATTGGTGATGTTGCAAAGAATCAAGTTGCAATGAATCCCACCAACACAG 185444 Query 474513 TTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATA 474572 |||||||||| || | ||||||||||| ||||| || || ||||| |||||| Sbjct 185443 TTTTTGATGCCAAGCGTTTGATTGGTCGGCGATTTGAGGACACTGTAGTCCAGGCTGATA 185384 Query 474573 TGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC--AAT 474630 || |||||||| || | || | | || ||| || |||||| | || ||| | | Sbjct 185383 TGAAACATTGGCCATTCGAAGTAGTCAGTGATGGAGGAAAACCAAAGATTCAAGTTGACT 185324 Query 474631 ACACGCAGGTGAAACTAA-ACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCA 474689 ||| | | |||||| || ||| | ||| || ||| |||||||||| ||||| || || Sbjct 185323 ACAAGAA--TGAAACAAAGACATTCTTC-CCTGAAGAAATTTCTTCTATGGTGTTGCTCA 185267 Query 474690 AAATGAAACAAACCGCG--AGCTCATATCTTGGACAAGAA-GTAACTGATGCAGTAATTA 474746 | ||||| | || || |||| || || || ||||| || | | |||| ||| ||| Sbjct 185266 AGATGAAGGAGACTGCTGAAGCT--TACCTAGG-CAAGACTGTTAGTAATGCTGTAGTTA 185210 Query 474747 CTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTG 474806 |||| || |||||||||||||| || || |||||||| ||||||||||| |||| ||||| Sbjct 185209 CTGTACCTGCATATTTTAATGACTCACAGCGTCAAGCCACTAAAGATGCTGGAACAATTG 185150 Query 474807 CAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTC 474866 | ||||| |||||| | | ||||| |||||||| ||||| || ||| ||||||||||| Sbjct 185149 CTGGTCTCAATGTTCTTCACATTATCAATGAACCCACAGCTGCTGCAATTGCTTATGGTT 185090 Query 474867 TTGATAAGAA 474876 | ||||| || Sbjct 185089 TAGATAAAAA 185080 >seq96 Length=444560 Score = 302 bits (334), Expect = 3e-76 Identities = 399/547 (73%), Gaps = 10/547 (2%) Strand=Plus/Plus Query 474335 GGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAGAA 474394 || |||||||| ||||| |||||| ||||| | ||| | || ||||||| || ||| Sbjct 118381 GGAATTGATTTGGGAACAACTTACTCATGTGTTGGTGTATTCCAGCATGGTAAGGTTGAA 118440 Query 474395 ATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAACT 474454 || ||||||||||| || |||||| | || || || || ||||| | ||| | || ||| Sbjct 118441 ATCATTGCCAATGATCAGGGTAATCGTACCACTCCTTCCTATGTGGCATTTTCCGATACT 118500 Query 474455 GAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTATT 474514 |||| ||| ||||| ||||||||||| | |||| ||| || || || || || Sbjct 118501 GAACGTCTCATTGGTGATGCTGCTAAGAACCAAGTTGCCATGAACCCCACCAACACAGTT 118560 Query 474515 TTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATG 474574 |||||||| || ||||||||||| |||| ||||| || || ||||| |||||||| Sbjct 118561 TTTGATGCCAAGAGATTGATTGGACGTAGGTTTGAGGACACAGTAGTCCAGGCTGATATG 118620 Query 474575 CGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAG--CAATAC 474632 |||||||| ||| | || || | || ||| || || ||| | || ||| | ||| Sbjct 118621 AAACATTGGCCATTTGAAGTTATCAGTGATGGAGGCAAGCCAAAGATCCAAGTTGAGTAC 118680 Query 474633 ACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAA 474692 | | | |||||| ||| | || | || ||| | || ||||| |||||||| ||| | Sbjct 118681 AAGAA--TGAAACGAAAAACTTCTTCCCAGAAGAGATCTCTTCCATGGTTTTGCTCAAGA 118738 Query 474693 TGAAACAAACCGC--GAGCTCATATCTTGGACAAGA-AGTAACTGATGCAGTAATTACTG 474749 |||| |||| || |||| || || || ||||| ||| | |||| || |||||| Sbjct 118739 TGAAGGAAACTGCTGAAGCT--TACCTAGG-CAAGACAGTTGCCAATGCTGTTGTTACTG 118795 Query 474750 TTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAG 474809 | || || ||||| ||||| || || |||||||| || |||||||| |||| ||||| | Sbjct 118796 TCCCTGCTTATTTCAATGACTCCCAGCGTCAAGCCACCAAAGATGCTGGAACTATTGCTG 118855 Query 474810 GTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTG 474869 |||| |||||| | ||||| || || ||||| || || || ||| ||||||||||| | | Sbjct 118856 GTCTCAATGTTCTTCGTATCATCAACGAACCTACTGCTGCTGCAATTGCTTATGGTTTAG 118915 Query 474870 ATAAGAA 474876 |||| || Sbjct 118916 ATAAAAA 118922 >seq19 Length=1465945 Score = 176 bits (194), Expect = 3e-38 Identities = 540/818 (66%), Gaps = 24/818 (3%) Strand=Plus/Plus Query 475367 ACAGCTGGAGATTCACATCTTGGTGGTGAAGATTTTGATAATAGACTTGT--ATCATGGT 475424 |||||||||||| | ||| | |||||||||||||| || || || | || | || | Sbjct 688511 ACAGCTGGAGATACTCATTTGGGTGGTGAAGATTTCGACAACCGAATGGTCAACCAC--T 688568 Query 475425 GTGTTGAAGATTTCAAGAGGAAAAATAAAGTTGATCTTTCAACATCTGCTAAAGCATTAA 475484 ||| |||| ||||| | ||| | || ||||| ||| | | | ||| | Sbjct 688569 TTGTACAAGAATTCAACCGAAAACACAAGAAGGATCTGTCATCCAATCCACGAGCTCTTC 688628 Query 475485 GACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTA 475544 | |||||| | || ||||| || ||||| |||||| | ||||||||| | | || | Sbjct 688629 GTCGTCTTCGCACAGCTTGCGAGCGTGCCAAGCGAACGCTTTCTTCTTCCAGCCAGGCCT 688688 Query 475545 CTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTA 475604 | |||| | || || || ||||| || || || | | || ||||| |||||| Sbjct 688689 CAATTGAGATCGACTCGCTCTTTGAGGGTATCGACTTCTACACCAGCATTACGAGGGCTC 688748 Query 475605 AATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTC 475664 |||||||| |||| | ||||| || | ||| | |||||||| ||| | | | Sbjct 688749 GTTTTGAAGAACTTTGCGCCGATCTTTTCCGCGGAACCTTGGAACCCGTAGAAAAGGCCC 688808 Query 475665 TCAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAA 475724 | ||||| | || | ||||| | ||| | || ||||| ||||| || |||||||||| Sbjct 688809 TTCGAGATGCCAAGATGGACAAGGCTCAAATTCACGAAATCGTTCTGGTCGGAGGTTCAA 688868 Query 475725 CAAGAATT-CCAAAAATAAGAGAAATGCTTTCATCATAT-TTTAATGGTAAAAAGTTAAA 475782 | | ||| |||| | | ||| | ||| || || || | || || || ||| |||| || Sbjct 688869 CTCGTATTCCCAAGATTCAGA-AGATG-TTGCAGGATTTCTTCAACGGAAAAGAGTTGAA 688926 Query 475783 TGAAAGTGTA--AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATT 475840 |||| || || ||||||||||| || || ||||| ||||| |||||||| ||||| Sbjct 688927 --CAAGTCTATCAACCCTGATGAAGCCGTCGCCTATGGCGCTGCAGTCCAAGCTGCTATC 688984 Query 475841 TTATCAGGTCAATCAGAC-GAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACT 475899 | ||| | | || | ||| | | || | | || | ||||| |||| || Sbjct 688985 CT-TCACGGAGACAAGTCTGAGGCTGTTCAAGATCTGCTGCTGCTCGACGTTGCTCCTCT 689043 Query 475900 TTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCC 475959 || || || ||||||| | || || | ||||| || || | |||| || | Sbjct 689044 ATCTTTGGGCATTGAAACTGCAGGCGGTGTGATGACATCCCTCATCAAGCGAAACACCAC 689103 Query 475960 TATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAAC 476019 || || || || | | || || |||| ||| ||||||||||| | ||| Sbjct 689104 CATTCCGACAAAGCAAACTCAGGTTTTCACCACCTATGCTGATAATCAACCCGGTGTGCT 689163 Query 476020 CATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAAC--TTGG--AA 476075 ||||| | | ||||| ||| || | || || | | ||||| | |||| || Sbjct 689164 GATCCAGGTGTACGAAGGAGAACGAGCGATGACCAAGG---ACAACAATCTGTTGGGCAA 689220 Query 476076 CTTTTAATCTTGA-AGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACT 476134 || || |||| || || ||||| || || |||| ||||| || |||||||||||| Sbjct 689221 ATTCGAA--TTGACCGGAATCCCTCCCGCACCACGAGGTGTTCCCCAGATTGAAGTTACT 689278 Query 476135 TTTGATATTGATGCAAATGGTATTCTTAATGTTACTGC 476172 || ||||| ||||| || || || | || || ||||| Sbjct 689279 TTCGATATCGATGCTAACGGCATCTTGAACGTGACTGC 689316 Score = 152 bits (168), Expect = 3e-31 Identities = 247/351 (70%), Gaps = 6/351 (2%) Strand=Plus/Plus Query 474518 GATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATGCGT 474577 ||||| ||| | ||||| |||||| |||||| ||| || || || || ||| Sbjct 687982 GATGCCAAACGTTTGATCGGTCGTCGTTTTGAAGATGCCTGCGTTCAGAGCGACATGAAG 688041 Query 474578 CATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC--AATACACG 474635 ||||||||||| || ||| | | | ||| || || || | || | | |||||| | Sbjct 688042 CATTGGCCTTTCAAAGTGGTTAGCGATGGAGGAAAGCCGAAAATCCAGGTTGAATACAAG 688101 Query 474636 CAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGA 474695 || ||||| || || ||||||||| | | || || ||||| | | || |||| Sbjct 688102 --GGCGAAACCAAGACTTTCTCACCGGAAGAGGTCTCGTCTATGGTGCTTGTGAAGATGA 688159 Query 474696 AACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCA 474754 | |||| || ||| | ||||||||||| | || || ||||| || || |||||||| Sbjct 688160 AGGAAACAGCCGAGG-CTTATCTTGGACAGAAGGTGACGGATGCTGTCATCACTGTTCCT 688218 Query 474755 GCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTT 474814 || || || || ||||| |||||||| ||||| |||||||| |||| ||| |||| | Sbjct 688219 GCCTACTTCAACGATTCCCAACGTCAGGCAACAAAAGATGCTGGAACTATTTCAGGCTTG 688278 Query 474815 AATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865 ||||| | || || ||||| || || || || || || ||||||||||| Sbjct 688279 AATGTCCTTCGCATCATTAACGAGCCCACTGCTGCAGCTATTGCTTATGGT 688329 Score = 132 bits (146), Expect = 3e-25 Identities = 126/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 474332 ATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTA 474391 |||||||||||| | || ||||| ||| ||||||| || | ||| |||||||||| Sbjct 687726 ATTGGTATTGATCTGGGTACTACCTACTCATGTGTAGGAGTATTCCAACATGGTAAAGTG 687785 Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451 || || || ||||| ||||| ||||| | ||||| ||||| |||||| | ||||| || Sbjct 687786 GAGATTATCGCCAACGACCAGGGTAACCGTACAACTCCATCTTATGTTGCCTTTACCGAC 687845 Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGC 474492 || |||| | | |||||||||||||||||| |||| | ||| Sbjct 687846 ACCGAACGTTTGATTGGAGATGCTGCTAAAAATCAGGTTGC 687886 >seq25 Length=1288025 Score = 136 bits (150), Expect = 3e-26 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 |||||||| || || | |||||| || || || || || ||||| | ||||| Sbjct 1060207 CGAAGACGAAGGACCAAATGAAGAGTGGACTCCTTCTGAATGTTGTAATCCGAAAGAGTA 1060148 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | ||||||||||||||||||||||||||||||||| || || |||||||| |||||| Sbjct 1060147 CGTCCATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGCTGCTGGTCAGGAGGGATTCCT 1060088 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731 ||||||||||| ||||| |||||| ||||| || || | | | ||| ||| Sbjct 1060087 TCCTTGTCTTGGATCTTAGCTTTGACGTTCTCAATGGTGTCTGACGGCTCAACTTCGAGG 1060028 Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||| || || | ||||| |||||||| || Sbjct 1060027 GTGATGGTTTTTCCTGTCAAGGTCTTCACGAAAATCTG 1059990 >seq11 Length=2187803 Score = 96.9 bits (106), Expect = 2e-14 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || || |||| |||||| | |||||||||||| || |||||||| || | || || Sbjct 911311 TTGTAGTCAGATAGAGTACGTCCATCTTCAAGTTGTTTGCCAGCAAAGATCAATCGCTGC 911252 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || |||||||| || |||||||||||||| || ||| |||||| ||| || || || Sbjct 911251 TGGTCAGGAGGGATACCTTCCTTGTCTTGGATTTTTGCCTTGACATTTTCGATGGTGTCT 911192 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | |||||||| || || ||||| || || ||||| ||||| || || Sbjct 911191 GAAGGCTCGACCTCAAGGGTGATGGTCTTACCCGTCAGGGTCTTGACGAAGATCTG 911136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267956747297528