Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq5 113 7e-20 >seq5 Length=2511979 Score = 113 bits (124), Expect = 7e-20 Identities = 246/364 (68%), Gaps = 14/364 (4%) Strand=Plus/Plus Query 18158 CACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAAC 18217 ||||| |||||||| || ||||| |||||||| || || | ||| || || || || Sbjct 2471918 CACGCGAAATCAGTATGCAAACCCTCATCTCTTGAGATCAGTTCATTTGAGAAGGTCAAG 2471977 Query 18218 CCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAAT 18277 || ||||| | ||||| ||||| |||||||| || | ||| || | ||| ||||| Sbjct 2471978 CCAGGCATCAAACCTCGCTTTTTAAGCCAAAAGATAGCTGCAAAGGACCCAGAGAAGAAA 2472037 Query 18278 ATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAAC-TGTAT--TTATTGCTC 18334 || || || || || || || | | ||||||| || || || ||||||| | Sbjct 2472038 ATTCCTTCCACTGCGGCAAAAGCAACGATTCTTTCACTGTAAGGTGCATCTTTATTGC-C 2472096 Query 18335 AGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCA 18394 | ||||| || ||||||||| ||| || || || || |||||| |||| Sbjct 2472097 A--ATCCACTTCATTGCCCATTCAGCTTTCTTAGCGATGCAAGGCATTGTCTCTACAGCA 2472154 Query 18395 TTAAACAAATCATCTTTTTCTTT----GGAATCTTTTATATAAGTGTCGATTAACAAAGA 18450 || || || | ||| | || | |||||| || |||||||| || || | || Sbjct 2472155 TTGAA--AAGC--CTTGTCCTCTCAGCGGAATCCTTGATATAAGTTTCAATGAGCAGGCT 2472210 Query 18451 ATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTC 18510 ||||||||||| || || ||||||| || || || |||| ||| || | | ||| || Sbjct 2472211 GTACATTTCAGAGTGGATATTTTCCATGGCAATTTGGAAACCATAGAAACAGCGAGCTTC 2472270 Query 18511 GGGA 18514 ||| Sbjct 2472271 AGGA 2472274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731824556397600