Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq25 132 9e-26 seq11 104 5e-17 seq5 91.5 3e-13 >seq25 Length=1288025 Score = 132 bits (146), Expect = 9e-26 Identities = 171/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || ||||| ||||| | ||||| || | |||| || || ||| ||||||||| Sbjct 1056831 ATTCCTCCTCTCAGACGGAGGACTAAGTGCAGGGTAGATTCCTTCTGGATGTTATAATCA 1056772 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || || || |||| |||| ||||| ||||||||||| || | ||| ||||| ||| Sbjct 1056771 GACAAGGTACGACCATCTTCCAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGATCTGGT 1056712 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || |||||||| || || || ||||| |||| ||| || | || Sbjct 1056711 GGAATGCCCTCCTTATCTTGAATCTTGGCCTTAACATTCTCGATAGTATCAGAAGGCTCA 1056652 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTATT 192542 || || || || ||||| || ||||| ||||| || | ||| |||||||| || || Sbjct 1056651 ACCTCAAGGGTGATGGTCTTGCCAGTCAATGTCTTGACAAAGATCTGCATCTTGTT 1056596 Score = 84.2 bits (92), Expect = 4e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| ||||| | ||| | || || || | ||||| ||| || ||| || ||||| Sbjct 1059988 ATACCTCCTCTCAAACGCAGAACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCT 1059929 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || ||||| || |||| |||| |||||||| |||||||| | | ||| ||||||||| Sbjct 1059928 GACAATGTACGACCATCTTCCAGCTGTTTACCGGCAAAGATGAGACGCTGCTGATCAGGT 1059869 Query 192427 GGTATTCCT 192435 || || ||| Sbjct 1059868 GGGATACCT 1059860 >seq11 Length=2187803 Score = 104 bits (114), Expect = 5e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || || || ||||||| || ||| |||| || | |||||| ||||||||||| |||| | Sbjct 911314 ATGTTGTAGTCAGATAGAGTACGTCCATCTTCAAGTTGTTTGCCAGCAAAGATCAATCGC 911255 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || || ||||| || || ||||| || ||||| ||||| || ||||| || | Sbjct 911254 TGCTGGTCAGGAGGGATACCTTCCTTGTCTTGGATTTTTGCCTTGACATTTTCGATGGTG 911195 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 ||||| | || || || || || ||||| ||||| || | || || | || |||||| Sbjct 911194 TCTGAAGGCTCGACCTCAAGGGTGATGGTCTTACCCGTCAGGGTCTTGACGAAGATCTGC 911135 Query 192535 ATTTT 192539 ||||| Sbjct 911134 ATTTT 911130 >seq5 Length=2511979 Score = 91.5 bits (100), Expect = 3e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 49824 CATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAAT 49883 || || ||||||||||| |||||||| || || || || | |||||| || || || Sbjct 2471918 CACGCGAAATCAGTATGCAAACCCTCATCTCTTGAGATCAGTTCATTTGAGAAGGTCAAG 2471977 Query 49884 CCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAAT 49943 || ||||| || |||| ||||||||||||||| || | |||||| | ||| ||||| Sbjct 2471978 CCAGGCATCAAACCTCGCTTTTTAAGCCAAAAGATAGCTGCAAAGGACCCAGAGAAGAAA 2472037 Query 49944 ATACCCTCGACACACGCAAATGCTATTATTCTT 49976 || || || || ||||| || | |||||| Sbjct 2472038 ATTCCTTCCACTGCGGCAAAAGCAACGATTCTT 2472070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984414585611100