Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq25 129 1e-24 seq11 105 1e-17 seq5 89.7 9e-13 >seq25 Length=1288025 Score = 129 bits (142), Expect = 1e-24 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171839 AATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATC 171898 ||||||||| | ||| || | || ||||| | ||| | ||| || ||| || ||||| Sbjct 1060217 AATACCACCGCGAAGACGAAGGACCAAATGAAGAGTGGACTCCTTCTGAATGTTGTAATC 1060158 Query 171899 TGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 || | || ||| | || || | ||| || ||||||||||| | | ||| |||||||| Sbjct 1060157 CGAAAGAGTACGTCCATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGCTGCTGGTCAGG 1060098 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 || |||||||| || ||||| || ||| ||| || || || || ||||||| || Sbjct 1060097 AGGGATTCCTTCCTTGTCTTGGATCTTAGCTTTGACGTTCTCAATGGTGTCTGACGGCTC 1060038 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || || |||||||| || || || || || | ||| |||||||| Sbjct 1060037 AACTTCGAGGGTGATGGTTTTTCCTGTCAAGGTCTTCACGAAAATCTGCAT 1059987 >seq11 Length=2187803 Score = 105 bits (116), Expect = 1e-17 Identities = 135/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||| || || || |||| || ||| | || || | |||||| |||||||| || |||| Sbjct 911315 AATGTTGTAGTCAGATAGAGTACGTCCATCTTCAAGTTGTTTGCCAGCAAAGATCAATCG 911256 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||| |||||||| || || ||||| || ||||| ||||| || ||||| || || Sbjct 911255 CTGCTGGTCAGGAGGGATACCTTCCTTGTCTTGGATTTTTGCCTTGACATTTTCGATGGT 911196 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||||| | || || || || || ||||| ||||| || | || || | ||| ||||| Sbjct 911195 GTCTGAAGGCTCGACCTCAAGGGTGATGGTCTTACCCGTCAGGGTCTTGACGAAGATCTG 911136 Query 172067 CATTTT 172072 |||||| Sbjct 911135 CATTTT 911130 >seq5 Length=2511979 Score = 89.7 bits (98), Expect = 9e-13 Identities = 167/243 (69%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 39126 CATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAAT 39185 || || ||||| ||||| ||||| || || || || || | |||||| || || || Sbjct 2471918 CACGCGAAATCAGTATGCAAACCCTCATCTCTTGAGATCAGTTCATTTGAGAAGGTCAAG 2471977 Query 39186 CCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAAT 39245 || ||||| || |||| ||||||||||||||| || | |||||| | ||| ||||| Sbjct 2471978 CCAGGCATCAAACCTCGCTTTTTAAGCCAAAAGATAGCTGCAAAGGACCCAGAGAAGAAA 2472037 Query 39246 ATACCCTCCACACACGCAAATGCTATTATTCTTGCTC-CAAACATTAATTTATCATCTAA 39304 || || ||||| ||||| || | |||||| | | || | || | | || Sbjct 2472038 ATTCCTTCCACTGCGGCAAAAGCAACGATTCTTTCACTGTAAGGTGCATCT-TTATTGCC 2472096 Query 39305 AATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTT 39364 |||||| || || ||||| || ||||| || ||| |||| || | |||| ||| || Sbjct 2472097 AATCCACTTCATTGCCCATTCAGCTTTCTTAGCGATGCAAGGCATTGTCTCTACAGCATT 2472156 Query 39365 AAA 39367 || Sbjct 2472157 GAA 2472159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905077324558800