Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq54 113 1e-19 seq11 102 2e-16 seq112 98.7 3e-15 >seq54 Length=841328 Score = 113 bits (124), Expect = 1e-19 Identities = 199/287 (69%), Gaps = 6/287 (2%) Strand=Plus/Plus Query 302584 TTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGA 302643 ||||| | ||| |||||||| ||||||||| | ||| || || ||||| || || ||| Sbjct 539136 TTGATGAGACGTCGCTGAATGTAACCAGTTTCGGCTGTCTTGACGGCTGTGTCGATGAGA 539195 Query 302644 CCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAG 302703 || |||||||||||||||| |||||| | | ||| ||| | || ||| | Sbjct 539196 CCTTCACGACCACCCATAGCGTGGAAGTAAAACTCAGAAGGTGTCAAGCCGGCAAGGTAT 539255 Query 302704 GAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGTAAAGTGTGGC 302760 || | || |||||||| | | |||||| || ||||||| ||| | ||||| ||| Sbjct 539256 GAATTTTCGACGAAACCTCTAGACTCGGGACCGTAATCGTC---TTTGATGAAGTGGGGC 539312 Query 302761 AGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGG 302820 | ||||| || | || | || || || || || || ||||||||||| || | | Sbjct 539313 AAAGTCCTCTTGCGGAATCCAAAGGGAATTCGTTTACCCTCGACGTTCTGCTGACCGACG 539372 Query 302821 CACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCCAGC 302867 || | ||| | ||| || || || | || |||||||||||||| Sbjct 539373 CAGGCAATGACCTGAGAGATGTTAATATTGGAACCCTTGGAGCCAGC 539419 >seq11 Length=2187803 Score = 102 bits (112), Expect = 2e-16 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 289098 TCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTG 289157 |||||| || |||| ||||| ||||||| ||||||||| ||||||||| | || || Sbjct 37017 TCTTACTCGAGATGGTCCAACACCAACAAACATTTCTAAAAATTCAGATCCCGACACGGT 37076 Query 289158 AATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCC 289217 |||||||| ||||| || |||||||| || | ||||| || || ||||| ||||| Sbjct 37077 AATGAATGGAACATTGGCCTCGCCTGCCGTAGCTTTTGCCAGGAGAGTTTTACCAGTTCC 37136 Query 289218 AGGTGGTCC 289226 |||||| || Sbjct 37137 AGGTGGCCC 37145 >seq112 Length=405685 Score = 98.7 bits (108), Expect = 3e-15 Identities = 211/309 (68%), Gaps = 20/309 (6%) Strand=Plus/Minus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGA----ATTTTGTCTCGCAAT 289085 ||||| | ||| ||||||||||| ||||| || ||||||| ||||| | ||| | Sbjct 16389 CCAACGGAATCTATTTCGTCAATAAAAATTACGCACGGAGCGCGCATTTTAGC-CGCC-T 16332 Query 289086 TGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGA 289145 || ||| | ||||| || || || || | || || | ||||| ||||||| | Sbjct 16331 TGAAAAGA--TCTCTGACGCGACGAGCGCCTTGTCCGACCAAAATTTCATCAAATTCTGG 16274 Query 289146 ---AGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAG 289202 ||||| | || | ||| || ||||| |||||||| || | || || || Sbjct 16273 TCCAGCGG---CATGGAAATATGGAACTCCAGCTTCTCCTGCTACCGCTCGGGCGAGTAG 16217 Query 289203 TGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCA-- 289260 || ||||| ||||||||||| || ||| || ||| |||||||||| ||| | ||| Sbjct 16216 CGTTTTACCAGTTCCAGGTGGGCCAACTAGTAAAACACCCTTTGGTAACTTTCCACCAAG 16157 Query 289261 -GCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTT 289319 | ||| | ||||| || | || || |||||||||||||||| || || | ||| Sbjct 16156 TGTAGA---GAACTTCTCTGGATTTTTCAAGAATTCTACAATTTCCTTTAGCTCTTGTTT 16100 Query 289320 TGCCTCATC 289328 ||||| || Sbjct 16099 AGCCTCTTC 16091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471719804159682