Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq25 114 1e-20 seq18 96.9 3e-15 seq11 95.1 1e-14 >seq25 Length=1288025 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || | || || || || || || || || || || | | Sbjct 1056601 GATGCAGATCTTTGTCAAGACATTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCTTC 1056660 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || | || || ||||| ||||| || || || || || || ||||| Sbjct 1056661 TGATACTATCGAGAATGTTAAGGCCAAGATTCAAGATAAGGAGGGCATTCCACCAGATCA 1056720 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || |||||||||||||| || ||||||||||| ||| | | | |||| |||||||| Sbjct 1056721 GCAGCGTTTGATCTTTGCTGGCAAACAGCTGGAAGATGGTCGTACCTTGTCTGATTATAA 1056780 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || |||||||| || || ||||| || | || || | ||||| Sbjct 1056781 CATCCAGAAGGAATCTACCCTGCACTTAGTCCTCCGTCTGAGAGGAGG 1056828 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || | || || ||||| || || |||||||| || | | Sbjct 1059987 ATGCAGATTTTCGTGAAGACCTTGACAGGAAAAACCATCACCCTCGAAGTTGAGCCGTCA 1060046 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| |||||||||||||| |||||||| ||||| || || Sbjct 1060047 GACACCATTGAGAACGTCAAAGCTAAGATCCAAGACAAGGAAGGAATCCCTCCTGACCAG 1060106 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | || ||||| || || || || || ||| | | | || ||||| ||| Sbjct 1060107 CAGCGTCTTATTTTTGCTGGAAAGCAACTTGAAGATGGACGTACTCTTTCGGATTACAAC 1060166 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||| || || || || ||||| | || | ||||| || Sbjct 1060167 ATTCAGAAGGAGTCCACTCTTCATTTGGTCCTTCGTCTTCGCGGTGG 1060213 Score = 102 bits (112), Expect = 7e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 24805 AGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAG 24864 ||| || || || ||||| || ||| | ||||||||||| ||||||||||| ||| | Sbjct 1058283 AGGTATCCCACCTGATCAGCAGCGTCTCATCTTTGCCGGTAAACAGCTGGAAGATGGTCG 1058342 Query 24865 AAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCG 24924 | | |||||||||| ||||| || ||||| || || || |||||||| ||||| ||| | Sbjct 1058343 TACCTTGTCAGATTACAACATCCAGAAGGAGTCTACCCTTCACTTGGTCTTGCGTTTGAG 1058402 Query 24925 CGGAGG 24930 ||||| Sbjct 1058403 AGGAGG 1058408 Score = 98.7 bits (108), Expect = 9e-16 Identities = 101/129 (78%), Gaps = 6/129 (5%) Strand=Plus/Plus Query 24805 AGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCG 24862 ||| || || || ||||| || ||| | ||||||||||| ||||||||||| ||| ||| Sbjct 1059860 AGGTATCCCACCTGATCAGCAGCGTCTCATCTTTGCCGGTAAACAGCTGGAAGATGGTCG 1059919 Query 24863 AGAAACA-TGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATT 24921 ||| |||||||||| ||||| |||||||| || || || |||||||| |||| || Sbjct 1059920 ---TACATTGTCAGATTACAACATCCAAAAGGAGTCTACTCTCCACTTGGTTCTGCGTTT 1059976 Query 24922 GCGCGGAGG 24930 | | ||||| Sbjct 1059977 GAGAGGAGG 1059985 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 24805 AGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAG 24864 ||| || || ||||| || || ||| | ||||||||||| || ||||| |||||| | Sbjct 1058682 AGGTATCCCACCCGACCAGCAGCGTCTCATCTTTGCCGGAAAGCAGCTCGAGGATGGTCG 1058741 Query 24865 AAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGT 24912 | | |||| ||||| ||||| |||||||| ||||| || |||||||| Sbjct 1058742 TACCTTGTCCGATTACAACATCCAAAAGGAGTCGACTCTTCACTTGGT 1058789 >seq18 Length=1446981 Score = 96.9 bits (106), Expect = 3e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 139119 GCTGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTG 139178 ||||||||| ||||| || | |||||||| || || ||||| ||||| ||||| ||||| Sbjct 597987 GCTGTATTCCACAATCTCTGTGCACAAATTGCTGCATTTGATGGTACCCAAATTCTGTTG 597928 Query 139179 ATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTG 139238 ||| || ||||| || ||||| ||||| | || || || ||||||||||| | ||| Sbjct 597927 ATTCGACTTGCGGTTGCAGGCATCCTTGTACAAGATGTATGGGGTGCCAGTTTCAATTTG 597868 Query 139239 TGTCTCTATAA 139249 | || |||| Sbjct 597867 CGATTCAATAA 597857 >seq11 Length=2187803 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/194 (71%), Gaps = 1/194 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || ||||| || || || || || || || | | Sbjct 911133 ATGCAGATCTTCGTCAAGACCCTGACGGGTAAGACCATCACCCTTGAGGTCGAGCCTTCA 911192 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || ||| ||||||||||| ||||| || ||||| || || Sbjct 911193 GACACCATCGAAAATGTCAAGGCAAAAATCCAAGACAAGGAAGGTATCCCTCCTGACCAG 911252 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||||||| || ||||| || || ||| | | | || || || ||| Sbjct 911253 CAGCGATTGATCTTTGCTGGCAAACAACTTGAAGATGGACGTACTCTATCTGACTACAAC 911312 Query 24884 ATTCA-AAAGGAAT 24896 ||||| ||||| || Sbjct 911313 ATTCAGAAAGGTAT 911326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449868435388080