Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daphnia_20pulex_20[genbank_20GCA_5F000187875.1_202011-02-04] 5,186 sequences; 197,206,209 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq11 116 3e-21 seq25 86.0 5e-12 >seq11 Length=2187803 Score = 116 bits (128), Expect = 3e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 34495 GGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTG 34554 |||||||| || || ||||||| |||| ||||||||| ||||| || |||||||| || Sbjct 1808688 GGACGTCCTAGTGCTTTGGCGACCTCGGTCATGTTGACAATGACTGTTTTGATGCCATTT 1808629 Query 34555 CCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCC 34614 || || ||||| ||||| || ||| || ||||||||||| || || ||||| ||||| Sbjct 1808628 CCTTTACCTTCTACCTTAGCCAAGAGCCGAGGCATTTTGTAACGATAAAACGCATCCGCA 1808569 Query 34615 ACATTGCGGTTAACGTT 34631 || || || || ||||| Sbjct 1808568 ACGTTCCGATTCACGTT 1808552 >seq25 Length=1288025 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 || ||||| || |||||||| || || || ||||| ||||| ||| | || |||||| Sbjct 1056599 AAGATGCAGATCTTTGTCAAGACATTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCT 1056658 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 |||||| ||| | || || |||||| || || || ||| | || ||| Sbjct 1056659 TCTGATACTATCGAGAATGTTAAGGCCAAGATTCAAGATAAGGAGGGCATTCCACCAGAT 1056718 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || | | || | ||| || ||||||||||| |||| | || || | ||||| Sbjct 1056719 CAGCAGCGTTTGATCTTTGCTGGCAAACAGCTGGAAGATGGTCGTACCTTGTCTGATTAT 1056778 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||||| || || |||||||| ||||| | || | | ||| |||| |||| Sbjct 1056779 AACATCCAGAAGGAATCTACCCTGCACTTAGTCCTCCGTCTGAGAGGAGGAA 1056830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412815506604698